Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
185
candidate regulatory elements
124
target gene predictions
118
chromatin state
79
accessible chromatin
60
histone modifications
55
gene expression
46
binding sites
45
Fine-mapped variants
35
eQTL
29
variant allelic effects
18
differential activity
3
caQTL
Date released
291
September, 2022
183
February, 2021
50
March, 2020
40
January, 2020
38
September, 2023
30
June, 2020
30
May, 2020
23
February, 2020
21
January, 2022
19
February, 2024
16
May, 2021
12
November, 2021
11
October, 2022
8
August, 2017
5
May, 2019
4
February, 2023
4
March, 2023
4
November, 2019
3
April, 2020
2
March, 2024
2
October, 2019
1
August, 2021
Available data
525
bed bed3+
131
tsv
110
bed bed9
50
bigWig
14
bigBed bed9
2
txt
Organism
796
Homo sapiens
Biosample type
435
tissue
231
primary cell
121
cell line
9
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
747
AMP
35
KPMP
12
ENCODE
3
LungMap
Genome assembly (visualization)
692
hg19
252
GRCh38
BIOSAMPLE
TYPE
797 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
gene expression
binding sites
Fine-mapped variants
eQTL
variant allelic effects
differential activity
caQTL
tissue
brain
29
16
18
2
3
1
1
2
1
caudate nucleus
5
3
4
2
1
1
3
2
1
coronary artery
3
3
3
3
1
3
2
2
1
tibial artery
3
2
3
3
1
3
2
2
substantia nigra
5
2
3
1
1
3
3
+ See 66 more…
primary cell
endothelial cell of umbilical vein
6
4
5
2
2
1
endothelial cell of hepatic sinusoid
6
4
6
mammary gland epithelial cell
3
4
3
1
1
1
dermis blood vessel endothelial cell
6
2
2
mammary epithelial cell
3
1
1
1
4
+ See 36 more…
cell line
MCF-7
9
6
5
1
2
3
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 15 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download