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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
266
gene expression
221
accessible chromatin
164
target gene predictions
135
candidate regulatory elements
101
differential activity
74
chromatin state
51
binding sites
50
variant allelic effects
29
histone modifications
5
eQTL
4
caQTL
Date released
220
February, 2021
208
September, 2022
177
November, 2021
170
September, 2023
73
February, 2024
43
March, 2023
26
June, 2020
24
August, 2021
23
May, 2021
22
January, 2021
18
January, 2020
18
May, 2020
18
October, 2022
13
February, 2020
10
April, 2020
7
August, 2018
6
October, 2019
5
March, 2020
5
May, 2022
4
August, 2017
3
January, 2022
3
November, 2020
2
February, 2023
1
July, 2020
1
June, 2021
Available data
653
bed bed3+
340
tsv
197
bigWig
85
txt
70
bed bed9
15
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
1100
Homo sapiens
Biosample type
1100
primary cell
156
tissue
76
in vitro differentiated cells
74
cell line
1
stem cell
Organ
819
epithelium
309
kidney
281
connective tissue
169
vasculature
126
pancreas
114
blood vessel
100
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
721
AMP
177
ENCODE
170
KPMP
22
T1D
10
LungMap
Genome assembly (visualization)
726
hg19
308
GRCh38
BIOSAMPLE
TYPE
1100 results
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table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
1
2
4
fibroblast
16
4
1
6
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
pericyte cell
10
10
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
3
6
3
3
1
1
2
pancreatic beta cell
3
8
3
3
1
keratinocyte
2
5
3
3
1
1
2
osteoblast
2
5
2
2
1
3
2
pancreatic alpha cell
3
7
3
3
1
endothelial cell of hepatic sinusoid
4
6
6
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
1
4
2
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
3
5
4
3
1
mammary gland epithelial cell
1
4
3
3
1
1
bronchial epithelial cell
1
2
4
2
2
1
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
glomerular visceral epithelial cell
5
2
1
2
1
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
1
2
2
3
2
mammary epithelial cell
1
1
3
1
4
retinal pigment epithelial cell
3
1
2
1
2
1
epithelial cell of prostate
3
4
2
hepatic stellate cell
1
3
1
1
1
1
1
skin fibroblast
2
3
2
2
fibroblast of mammary gland
1
1
2
1
2
1
fibroblast of pulmonary artery
1
1
2
1
2
1
fibroblast of villous mesenchyme
1
1
2
1
2
1
kidney glomerular epithelial cell
1
2
1
2
1
1
myoepithelial cell of mammary gland
2
4
2
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
1
2
1
2
1
1
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
mesangial cell
5
2
mesenchymal stem cell
1
2
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
pancreatic polypeptide-secreting cell
2
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
Connecting Tubule Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Transitional Principal-Intercalated Cell
3
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
adipocyte
1
2
1
adult endothelial progenitor cell
3
1
aortic endothelial cell
2
1
1
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
kidney connecting tubule epithelial cell
4
mesothelial cell
2
1
1
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
preadipocyte
1
1
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
S-shaped body
3
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
brain pericyte
1
1
1
club cell
2
1
endocardial cell
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
1
1
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
pulmonary interstitial fibroblast
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
extracellular matrix secreting cell
2
fat cell
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
kidney inner medulla collecting duct intercalated cell
2
luteal cell
1
1
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
activated pancreatic stellate cell
1
amniotic epithelial cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
gastric goblet cell
1
granulosa cell
1
intestinal epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
mesenchymal stem cell of adipose
1
neuroendocrine cell
1
parietal epithelial cell
1
pericardium fibroblast
1
placental villus capillary endothelial cell
1
proximal tubule
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
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