Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
146
accessible chromatin
candidate regulatory elements
86
target gene predictions
56
chromatin state
50
gene expression
37
binding sites
29
histone modifications
22
eQTL
18
variant allelic effects
14
differential activity
6
Fine-mapped variants
2
caQTL
2
pQTL
Date released
96
September, 2022
77
February, 2021
54
November, 2021
29
November, 2022
25
February, 2023
25
June, 2020
19
February, 2024
17
September, 2023
16
May, 2021
14
October, 2022
12
January, 2020
12
May, 2020
11
August, 2021
11
February, 2020
9
March, 2020
7
August, 2017
7
March, 2023
6
January, 2022
3
April, 2020
3
May, 2022
3
November, 2020
2
January, 2021
2
May, 2024
2
October, 2019
2
September, 2018
1
August, 2018
1
January, 2018
1
June, 2021
Available data
328
bed bed3+
91
bigWig
67
tsv
49
bed bed9
7
txt
2
bigBed bed9
1
bigBed narrowPeak
Organism
468
Homo sapiens
Biosample type
249
primary cell
136
tissue
49
in vitro differentiated cells
33
cell line
1
stem cell
Organ
849
epithelium
493
kidney
380
connective tissue
355
brain
253
pancreas
229
musculature of body
216
vasculature
185
heart
180
lung
176
intestine
171
bodily fluid
165
blood vessel
164
blood
158
embryo
150
limb
133
liver
129
skin of body
105
large intestine
91
eye
87
extraembryonic component
74
uterus
70
adipose tissue
68
stomach
65
artery
64
bone element
59
mammary gland
51
prostate gland
47
small intestine
45
adrenal gland
44
placenta
41
lymph node
36
penis
33
gonad
33
ureter
29
thymus
28
esophagus
27
spinal cord
19
nerve
19
spleen
17
lymphatic vessel
17
testis
17
vein
15
lymphoid tissue
15
ovary
15
thyroid gland
14
skeleton
13
pituitary gland
12
bronchus
11
bone marrow
11
mouth
8
breast
7
urinary bladder
6
tongue
6
vagina
5
trachea
3
nose
1
pericardium
Project
388
AMP
54
ENCODE
15
KPMP
4
ITG
3
LungMap
2
T1D
2
community
Genome assembly (visualization)
393
hg19
137
GRCh38
2
hg18
annotation_type!
candidate regulatory elements
BIOSAMPLE
TYPE
468 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
chromatin state
gene expression
binding sites
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
pQTL
primary cell
fibroblast
16
4
1
2
6
pericyte cell
10
10
1
osteoblast
5
2
1
2
3
2
fibroblast of lung
4
4
2
foreskin fibroblast
1
2
1
4
2
+ See 48 more…
tissue
retina
23
3
3
1
1
1
1
1
adipose tissue
2
8
6
3
1
4
1
pigmented layer of retina
20
subcutaneous adipose tissue
2
1
5
6
1
1
3
omental fat pad
2
2
2
2
2
3
+ See 10 more…
in vitro differentiated cells
adipocyte
4
6
6
1
1
1
mesenchymal stem cell
1
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
fibroblast
1
1
+ See 9 more…
cell line
WERI-Rb-1
1
1
1
2
1
GM23248
1
1
1
1
1
fibroblast of cardiac tissue
2
1
2
HT1080
1
1
adipose tissue derived mesenchymal stem cell
1
1
+ See 9 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download