Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
247
gene expression
239
candidate regulatory elements
150
target gene predictions
138
accessible chromatin
125
chromatin state
70
differential activity
38
binding sites
32
variant allelic effects
31
histone modifications
23
eQTL
2
caQTL
2
pQTL
Date released
345
September, 2022
297
February, 2021
157
September, 2023
53
November, 2021
38
August, 2021
35
June, 2020
29
May, 2020
24
January, 2020
19
February, 2024
18
February, 2020
16
May, 2021
14
October, 2022
March, 2020
7
August, 2017
7
January, 2022
7
March, 2023
7
November, 2022
3
April, 2020
3
May, 2022
3
November, 2020
2
January, 2021
2
March, 2024
2
October, 2019
2
September, 2018
1
April, 2019
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2021
1
May, 2019
Available data
636
bed bed3+
304
tsv
118
bed bed9
93
txt
91
bigWig
4
bigBed bed9
1
bigBed narrowPeak
Organism
1097
Homo sapiens
Biosample type
589
primary cell
389
tissue
69
cell line
50
in vitro differentiated cells
Organ
943
epithelium
649
kidney
449
connective tissue
428
brain
366
musculature of body
310
lung
287
intestine
268
pancreas
254
vasculature
240
heart
235
limb
218
bodily fluid
214
embryo
207
blood
204
skin of body
192
blood vessel
173
large intestine
146
extraembryonic component
146
liver
118
stomach
109
eye
89
bone element
87
mammary gland
83
small intestine
83
uterus
81
adipose tissue
78
prostate gland
73
placenta
72
adrenal gland
69
artery
64
penis
64
ureter
62
lymph node
49
gonad
48
thymus
44
esophagus
40
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
thyroid gland
22
nerve
22
ovary
22
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
vagina
9
urinary bladder
5
trachea
4
nose
1
pericardium
Project
880
AMP
155
KPMP
53
ENCODE
4
ITG
3
LungMap
2
T1D
Genome assembly (visualization)
765
hg19
221
GRCh38
2
hg18
month_released!
March, 2020
BIOSAMPLE
TYPE
1097 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
pQTL
primary cell
fibroblast
4
16
1
6
2
epithelial cell of proximal tubule
16
2
1
1
1
1
1
pericyte cell
1
10
10
1
glomerular endothelial cell
14
2
1
2
1
1
osteoblast
2
2
2
5
1
3
2
+ See 110 more…
tissue
kidney
7
29
14
10
16
1
1
2
1
right kidney
20
10
1
10
1
renal cortex interstitium
20
9
1
9
1
renal pelvis
19
9
2
9
1
left kidney
18
9
9
+ See 26 more…
cell line
HEK293
3
1
1
1
2
1
GM23248
2
1
1
1
1
1
ACHN
2
1
1
1
Caki2
2
1
1
1
RCC 7860
2
1
1
1
+ See 16 more…
in vitro differentiated cells
adipocyte
1
4
6
4
6
1
1
mesenchymal stem cell
3
3
1
2
1
1
chondrocyte
5
fibroblast
1
1
Adipose SGBS cell line (adipocyte)
1
+ See 8 more…
See all biosamples
Download