Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
303
gene expression
302
accessible chromatin
208
target gene predictions
195
candidate regulatory elements
107
chromatin state
106
differential activity
75
binding sites
57
variant allelic effects
53
histone modifications
23
eQTL
6
Fine-mapped variants
4
caQTL
2
pQTL
Date released
315
February, 2021
289
September, 2022
177
November, 2021
172
September, 2023
94
February, 2024
51
May, 2021
46
June, 2020
45
March, 2023
34
August, 2021
25
May, 2020
24
January, 2020
22
January, 2021
22
November, 2022
18
February, 2020
18
October, 2022
16
March, 2020
13
February, 2023
10
April, 2020
10
August, 2017
7
August, 2018
7
January, 2022
7
October, 2019
5
May, 2022
3
March, 2024
3
November, 2020
2
November, 2019
2
September, 2018
1
January, 2018
1
July, 2020
1
June, 2021
Available data
903
bed bed3+
388
tsv
232
bigWig
97
bed bed9
85
txt
15
bigBed narrowPeak
6
csv
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1441
Homo sapiens
Biosample type
1100
primary cell
190
tissue
76
in vitro differentiated cells
74
cell line
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1056
AMP
177
ENCODE
170
KPMP
22
T1D
10
LungMap
4
ITG
2
community
Genome assembly (visualization)
1019
hg19
364
GRCh38
2
hg18
BIOSAMPLE
TYPE
1441 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
pQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
1
2
4
fibroblast
16
4
1
6
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
pericyte cell
10
10
1
1
+ See 194 more…
tissue
spleen
1
2
8
15
6
1
1
adipose tissue
3
2
8
7
6
1
1
4
subcutaneous adipose tissue
5
2
2
1
1
1
6
3
pigmented layer of retina
20
omental fat pad
2
2
2
5
2
2
3
+ See 27 more…
in vitro differentiated cells
adipocyte
1
4
6
4
6
1
1
mesenchymal stem cell
1
3
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
hepatocyte
1
2
1
+ See 17 more…
cell line
EndoC_BH1
8
8
1
3
1
GM23248
1
1
2
1
1
1
fibroblast of cardiac tissue
2
1
2
HT1080
1
2
1
keratinocyte
3
1
+ See 18 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download