Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
81
candidate regulatory elements
70
target gene predictions
58
gene expression
42
accessible chromatin
33
differential activity
18
binding sites
17
histone modifications
11
variant allelic effects
10
eQTL
5
chromatin state
2
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
84
February, 2021
84
September, 2022
47
March, 2023
40
May, 2021
20
January, 2021
16
August, 2021
16
February, 2024
14
June, 2020
7
August, 2018
7
March, 2020
4
August, 2017
4
May, 2020
2
January, 2020
1
April, 2019
1
February, 2020
1
February, 2023
1
January, 2018
1
June, 2021
1
October, 2022
Available data
244
bed bed3+
82
tsv
24
bigWig
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
351
Homo sapiens
Biosample type
119
primary cell
108
tissue
96
cell line
27
in vitro differentiated cells
1
stem cell
Organ
715
epithelium
547
kidney
336
connective tissue
314
brain
279
musculature of body
231
lung
216
pancreas
210
intestine
179
vasculature
166
limb
165
bodily fluid
162
heart
157
skin of body
156
blood
135
embryo
131
large intestine
130
blood vessel
109
extraembryonic component
96
liver
93
eye
86
stomach
67
mammary gland
66
adipose tissue
66
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
47
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
lymphatic vessel
16
ovary
16
thyroid gland
14
mouth
14
nerve
12
bronchus
12
pituitary gland
11
bone marrow
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
329
AMP
20
T1D
2
community
Genome assembly (visualization)
391
hg19
GRCh38
assembly!
GRCh38
BIOSAMPLE
TYPE
351 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
gene expression
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
chromatin state
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
2
3
3
3
1
2
1
pancreatic alpha cell
3
3
4
3
1
pancreatic beta cell
3
3
4
3
1
pancreatic delta cell
3
3
4
3
1
trophoblast cell
7
5
1
1
+ See 13 more…
tissue
islet of Langerhans
1
11
2
2
1
1
10
3
2
2
2
body of pancreas
8
5
2
1
pancreas
5
5
2
1
1
1
1
chorionic villus
8
4
endocrine pancreas
7
4
+ See 5 more…
cell line
EndoC_BH1
1
8
7
3
1
H1-hESC
1
2
8
1
2
1
H9
7
2
H7-hESC
1
2
1
1
HUES6
2
1
1
1
+ See 20 more…
in vitro differentiated cells
endodermal cell
4
2
mesodermal cell
4
1
1
trophoblast cell
2
2
ectodermal cell
2
1
pancreatic ductal cell
3
+ See 4 more…
stem cell
H1-hESC
1
See all biosamples
Download