Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
263
gene expression
219
accessible chromatin
130
target gene predictions
92
differential activity
82
candidate regulatory elements
56
binding sites
41
variant allelic effects
38
histone modifications
6
chromatin state
3
eQTL
2
caQTL
Date released
249
February, 2021
September, 2022
155
September, 2023
129
November, 2021
127
February, 2024
41
May, 2021
38
March, 2023
35
June, 2020
31
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
9
February, 2020
7
April, 2020
7
March, 2020
7
October, 2022
6
August, 2018
5
October, 2019
4
August, 2017
2
March, 2024
2
May, 2022
1
July, 2020
1
November, 2019
Available data
568
bed bed3+
334
tsv
175
bigWig
78
txt
13
bigBed narrowPeak
6
csv
2
bed bed9
2
bigBed bed9
Organism
932
Homo sapiens
Biosample type
696
primary cell
137
cell line
63
tissue
35
in vitro differentiated cells
1
stem cell
Organ
798
epithelium
427
kidney
338
connective tissue
286
brain
233
pancreas
191
vasculature
171
musculature of body
147
heart
144
blood vessel
143
bodily fluid
138
blood
134
embryo
125
intestine
110
liver
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
65
adipose tissue
54
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
619
AMP
155
KPMP
129
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
573
hg19
238
GRCh38
month_released!
September, 2022
BIOSAMPLE
TYPE
932 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
binding sites
variant allelic effects
histone modifications
chromatin state
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
2
1
2
4
epithelial cell of proximal tubule
16
1
1
1
1
pancreatic ductal cell
3
6
3
3
1
1
2
glomerular endothelial cell
14
2
1
1
+ See 147 more…
cell line
H1-hESC
8
1
38
2
1
EndoC_BH1
8
8
1
3
1
H9
7
6
HUES8
1
4
1
CyT49
4
1
+ See 23 more…
tissue
pigmented layer of retina
20
breast epithelium
1
1
3
esophagus squamous epithelium
1
4
trophoblast
1
1
2
1
chorionic villus
4
+ See 21 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
mesodermal cell
3
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 11 more…
stem cell
H1-hESC
1
See all biosamples
Download