Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
136
target gene predictions
131
candidate regulatory elements
81
chromatin state
42
accessible chromatin
34
gene expression
20
binding sites
18
histone modifications
10
variant allelic effects
9
Fine-mapped variants
6
eQTL
2
caQTL
2
differential activity
Date released
195
September, 2022
106
February, 2021
56
February, 2024
16
August, 2021
16
June, 2020
16
March, 2020
15
November, 2021
12
January, 2020
11
February, 2020
11
May, 2020
11
May, 2021
6
April, 2019
5
September, 2023
3
February, 2023
3
January, 2022
3
November, 2019
2
October, 2019
1
April, 2020
1
August, 2017
1
May, 2019
1
October, 2022
Available data
365
bed bed3+
75
bed bed9
44
tsv
27
bigWig
10
bigBed bed9
Organism
491
Homo sapiens
Biosample type
249
tissue
138
cell line
70
primary cell
33
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
470
AMP
15
ENCODE
5
KPMP
1
LungMap
Genome assembly (visualization)
450
hg19
178
GRCh38
BIOSAMPLE
TYPE
491 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
gene expression
binding sites
histone modifications
variant allelic effects
Fine-mapped variants
eQTL
caQTL
differential activity
tissue
heart
20
37
21
5
3
1
1
2
heart left ventricle
7
11
8
3
1
1
2
1
coronary artery
3
3
3
3
1
2
3
2
1
heart right ventricle
5
6
5
1
1
1
right atrium auricular region
2
3
2
3
2
2
3
2
+ See 15 more…
cell line
H1-hESC
39
1
1
1
8
2
1
H9
8
7
1
H7-hESC
2
1
1
1
1
HUES6
1
2
1
1
1
HUES8
4
1
1
+ See 17 more…
primary cell
trophoblast cell
5
7
4
1
1
fibroblast of cardiac tissue
4
3
3
2
dermis lymphatic vessel endothelial cell
2
2
2
Lymphatic Endothelial Cell
3
2
endothelial cell of lymphatic vessel
1
3
+ See 13 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
cardiac mesoderm primordium
1
1
1
+ See 5 more…
stem cell
H1-hESC
1
See all biosamples
Download