Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
109
target gene predictions
89
candidate regulatory elements
49
chromatin state
38
accessible chromatin
35
gene expression
29
binding sites
26
histone modifications
10
eQTL
4
differential activity
4
variant allelic effects
3
Fine-mapped variants
1
caQTL
Date released
139
September, 2022
87
February, 2021
80
February, 2024
18
August, 2021
17
June, 2020
11
March, 2020
10
May, 2021
7
November, 2021
4
August, 2017
4
March, 2023
3
January, 2020
3
January, 2022
3
May, 2020
3
October, 2022
2
February, 2020
2
May, 2022
1
July, 2020
1
March, 2024
1
November, 2019
1
September, 2018
Available data
298
bed bed3+
45
bed bed9
39
tsv
25
bigWig
3
csv
1
bam
1
bigBed bed9
Organism
397
Homo sapiens
Biosample type
162
cell line
111
tissue
86
primary cell
37
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
390
AMP
7
ENCODE
Genome assembly (visualization)
352
hg19
146
GRCh38
2
hg18
BIOSAMPLE
TYPE
397 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
gene expression
binding sites
histone modifications
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
cell line
H1-hESC
39
1
1
1
8
2
1
HepG2
3
2
2
2
3
5
H9
8
7
1
H7-hESC
2
1
1
1
1
HUES6
1
2
1
1
1
+ See 20 more…
tissue
liver
10
13
9
4
1
1
2
7
1
1
testis
3
7
3
1
1
1
1
1
chorionic villus
4
8
4
trophoblast
3
4
2
1
1
right lobe of liver
1
2
1
1
1
3
+ See 4 more…
primary cell
hepatocyte
3
1
1
8
13
1
4
2
trophoblast cell
5
7
4
1
1
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
1
1
1
3
1
1
1
pancreatic endothelial cell
1
3
+ See 5 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
hepatocyte
1
2
1
+ See 5 more…
stem cell
H1-hESC
1
See all biosamples
Download