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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
135
candidate regulatory elements
121
target gene predictions
62
chromatin state
35
binding sites
26
accessible chromatin
23
histone modifications
10
gene expression
1
eQTL
Date released
183
September, 2022
126
February, 2021
51
February, 2024
23
June, 2020
10
May, 2021
8
August, 2021
6
October, 2022
3
November, 2021
1
August, 2017
1
January, 2022
1
March, 2020
Available data
341
bed bed3+
61
bed bed9
10
tsv
3
bigWig
Organism
413
Homo sapiens
Biosample type
207
cell line
97
tissue
72
primary cell
36
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
410
AMP
3
ENCODE
Genome assembly (visualization)
402
hg19
116
GRCh38
BIOSAMPLE
TYPE
413 results
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candidate regulatory elements
target gene predictions
chromatin state
binding sites
accessible chromatin
histone modifications
gene expression
eQTL
cell line
H1-hESC
1
39
1
2
1
1
8
H9
7
8
1
GM12864
2
1
1
2
1
1
GM12865
2
1
1
2
1
1
MM.1S
2
2
1
1
1
1
+ See 34 more…
tissue
placenta
26
15
14
1
1
2
1
chorionic villus
8
4
4
trophoblast
4
3
2
1
1
embryonic facial prominence
1
1
1
1
first pancreatic bud
1
1
+ See 3 more…
primary cell
foreskin keratinocyte
11
4
4
trophoblast cell
7
5
4
1
1
foreskin fibroblast
6
2
1
4
1
2
fibroblast of villous mesenchyme
2
1
1
2
1
1
foreskin melanocyte
4
1
1
+ See 4 more…
in vitro differentiated cells
endodermal cell
4
2
2
mesodermal cell
4
1
1
1
trophoblast cell
2
2
1
ectodermal cell
2
1
1
cardiac mesoderm primordium
1
1
1
+ See 5 more…
stem cell
H1-hESC
1
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