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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
118
target gene predictions
112
candidate regulatory elements
56
chromatin state
33
binding sites
24
accessible chromatin
23
histone modifications
11
gene expression
2
variant allelic effects
1
eQTL
Date released
162
September, 2022
110
February, 2021
53
February, 2024
19
June, 2020
11
May, 2021
8
August, 2021
8
November, 2021
4
October, 2022
2
August, 2017
1
January, 2022
1
March, 2020
1
March, 2024
Available data
314
bed bed3+
54
bed bed9
11
tsv
5
bigWig
Organism
380
Homo sapiens
Biosample type
216
cell line
78
primary cell
52
tissue
33
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
372
AMP
8
ENCODE
Genome assembly (visualization)
368
hg19
114
GRCh38
BIOSAMPLE
TYPE
380 results
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target gene predictions
candidate regulatory elements
chromatin state
binding sites
accessible chromatin
histone modifications
gene expression
variant allelic effects
eQTL
cell line
H1-hESC
39
1
1
2
1
1
8
MCF-7
6
9
5
3
1
2
H9
8
7
1
22Rv1
2
4
2
1
1
LNCaP clone FGC
2
3
2
+ See 27 more…
primary cell
trophoblast cell
5
7
4
1
1
mammary gland epithelial cell
4
3
3
1
1
1
mammary epithelial cell
1
3
1
4
1
epithelial cell of prostate
3
4
2
fibroblast of mammary gland
1
2
1
2
1
1
+ See 6 more…
tissue
chorionic villus
4
8
4
prostate gland
2
4
2
2
1
2
1
trophoblast
3
4
2
1
1
embryonic facial prominence
1
1
1
1
first pancreatic bud
1
1
+ See 4 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
cardiac mesoderm primordium
1
1
1
+ See 4 more…
stem cell
H1-hESC
1
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