Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
110
target gene predictions
104
candidate regulatory elements
49
chromatin state
22
binding sites
20
accessible chromatin
18
histone modifications
13
gene expression
3
eQTL
1
variant allelic effects
Date released
144
September, 2022
95
February, 2021
52
February, 2024
17
June, 2020
11
May, 2021
8
August, 2021
3
January, 2022
3
March, 2024
2
March, 2020
2
November, 2021
1
August, 2017
1
November, 2019
1
October, 2022
Available data
276
bed bed3+
48
bed bed9
13
tsv
3
bigWig
Organism
340
Homo sapiens
Biosample type
180
cell line
97
tissue
32
primary cell
30
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
338
AMP
2
ENCODE
Genome assembly (visualization)
324
hg19
105
GRCh38
BIOSAMPLE
TYPE
340 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
binding sites
accessible chromatin
histone modifications
gene expression
eQTL
variant allelic effects
cell line
H1-hESC
39
1
1
2
1
1
8
H9
8
7
1
22Rv1
2
4
2
1
1
LNCaP clone FGC
2
3
2
PC-3
1
2
1
1
1
1
+ See 24 more…
tissue
spleen
8
15
6
1
2
1
1
chorionic villus
4
8
4
prostate gland
2
4
2
2
1
2
1
breast epithelium
3
5
2
1
trophoblast
3
4
2
1
1
+ See 7 more…
primary cell
trophoblast cell
5
7
4
1
1
epithelial cell of prostate
3
4
2
primordial germ cell
1
1
luminal epithelial cell of prostatic duct
1
placental hematopoietic stem cell
1
+ See 1 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
cardiac mesoderm primordium
1
1
1
+ See 3 more…
stem cell
H1-hESC
1
See all biosamples
Download