Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
gene expression
212
accessible chromatin
122
target gene predictions
candidate regulatory elements
92
differential activity
53
chromatin state
binding sites
41
variant allelic effects
28
histone modifications
3
eQTL
2
caQTL
Date released
155
September, 2023
127
November, 2021
112
February, 2021
103
September, 2022
70
February, 2024
38
March, 2023
34
May, 2021
25
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
5
October, 2019
3
August, 2017
2
March, 2024
2
May, 2022
1
July, 2020
1
November, 2019
1
October, 2022
Available data
404
bed bed3+
324
tsv
176
bigWig
78
txt
50
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
806
Homo sapiens
Biosample type
703
primary cell
48
tissue
34
cell line
21
in vitro differentiated cells
Organ
806
epithelium
486
kidney
347
connective tissue
339
brain
248
pancreas
222
musculature of body
195
vasculature
180
heart
171
lung
170
intestine
149
blood vessel
148
limb
145
embryo
125
bodily fluid
120
liver
119
blood
111
skin of body
99
large intestine
85
eye
84
extraembryonic component
70
uterus
68
adipose tissue
68
stomach
59
artery
56
bone element
47
mammary gland
47
small intestine
45
adrenal gland
43
prostate gland
41
placenta
33
ureter
30
gonad
29
lymph node
29
penis
28
esophagus
28
thymus
25
spinal cord
19
nerve
18
spleen
15
lymphatic vessel
15
lymphoid tissue
15
ovary
15
thyroid gland
14
skeleton
14
testis
14
vein
13
pituitary gland
11
mouth
10
bronchus
9
bone marrow
8
breast
7
urinary bladder
6
tongue
6
vagina
3
nose
3
trachea
1
pericardium
Project
495
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
457
hg19
228
GRCh38
annotation_type!
candidate regulatory elements
binding sites
BIOSAMPLE
TYPE
806 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
chromatin state
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
1
1
2
hepatocyte
13
8
3
1
2
4
epithelial cell of proximal tubule
16
1
1
1
1
glomerular endothelial cell
14
2
1
1
1
pancreatic beta cell
3
8
3
3
1
+ See 144 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
2
esophagus squamous epithelium
1
2
2
pancreatic ductal cell
2
breast - mammary tissue
1
+ See 14 more…
cell line
EndoC_BH1
8
8
1
3
1
choroid plexus epithelial cell
1
1
colon epithelial cell
1
1
epithelial cell of prostate
1
1
glomerular visceral epithelial cell
1
1
+ See 5 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte(AFP)
3
pancreatic ductal cell
3
foreskin keratinocyte
1
1
hepatocyte
1
1
+ See 4 more…
See all biosamples
Download