Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
257
gene expression
219
accessible chromatin
129
target gene predictions
108
candidate regulatory elements
92
differential activity
59
chromatin state
46
binding sites
31
histone modifications
27
variant allelic effects
8
eQTL
6
Fine-mapped variants
4
caQTL
Date released
206
February, 2021
166
September, 2022
155
September, 2023
127
November, 2021
76
February, 2024
38
March, 2023
36
May, 2021
27
June, 2020
23
August, 2021
20
January, 2021
May, 2020
18
January, 2020
15
February, 2023
15
November, 2022
12
February, 2020
12
March, 2020
7
April, 2020
7
October, 2022
6
August, 2018
5
October, 2019
3
August, 2017
3
January, 2022
3
November, 2019
2
March, 2024
2
May, 2022
1
July, 2020
1
May, 2019
Available data
566
bed bed3+
335
tsv
182
bigWig
78
txt
56
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
986
Homo sapiens
Biosample type
817
primary cell
98
tissue
45
cell line
26
in vitro differentiated cells
Organ
934
epithelium
633
kidney
448
connective tissue
447
brain
370
musculature of body
311
lung
289
intestine
271
pancreas
251
vasculature
244
heart
234
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
193
blood vessel
174
large intestine
153
liver
146
extraembryonic component
119
stomach
107
eye
88
bone element
87
mammary gland
86
adipose tissue
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
placenta
70
artery
64
penis
62
lymph node
61
ureter
50
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
23
ovary
23
thyroid gland
22
nerve
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
675
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
631
hg19
258
GRCh38
month_released!
May, 2020
BIOSAMPLE
TYPE
986 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
1
2
1
2
hepatocyte
13
8
3
1
1
1
4
1
epithelial cell of proximal tubule
16
1
1
2
1
1
glomerular endothelial cell
14
2
1
2
1
foreskin keratinocyte
4
11
4
+ See 145 more…
tissue
pigmented layer of retina
20
coronary artery
1
3
3
3
3
2
3
1
tibial artery
1
3
2
3
2
2
3
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
+ See 19 more…
cell line
EndoC_BH1
8
8
1
3
keratinocyte
3
1
smooth muscle cell of the coronary artery
1
1
1
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 7 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download