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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
217
gene expression
143
accessible chromatin
105
target gene predictions
78
differential activity
69
candidate regulatory elements
37
chromatin state
36
variant allelic effects
19
binding sites
15
histone modifications
2
caQTL
1
eQTL
Date released
149
February, 2021
135
September, 2023
124
November, 2021
109
September, 2022
46
February, 2024
32
March, 2023
23
August, 2021
20
January, 2021
15
May, 2021
13
June, 2020
9
January, 2020
9
May, 2020
7
February, 2020
6
August, 2018
5
April, 2020
5
October, 2019
5
October, 2022
4
March, 2020
2
August, 2017
2
May, 2022
1
February, 2023
1
July, 2020
Available data
388
bed bed3+
277
tsv
137
bigWig
78
txt
35
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
722
Homo sapiens
Biosample type
722
primary cell
61
tissue
41
cell line
26
in vitro differentiated cells
Organ
819
epithelium
309
kidney
281
connective tissue
169
vasculature
126
pancreas
blood vessel
100
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
438
AMP
135
KPMP
124
ENCODE
20
T1D
5
LungMap
Genome assembly (visualization)
425
hg19
188
GRCh38
organ_slims!
blood vessel
BIOSAMPLE
TYPE
722 results
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Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
caQTL
eQTL
primary cell
endothelial cell
9
15
7
2
2
1
2
1
hepatocyte
13
8
3
1
1
2
1
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
3
6
3
3
1
1
2
pancreatic beta cell
3
8
3
3
1
keratinocyte
2
5
3
3
1
1
2
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
3
5
4
3
1
mammary gland epithelial cell
1
4
3
3
1
1
bronchial epithelial cell
1
2
4
2
2
1
glomerular visceral epithelial cell
5
2
1
2
1
kidney tubule cell
1
2
2
3
2
mammary epithelial cell
1
1
3
1
4
retinal pigment epithelial cell
3
1
2
1
2
1
epithelial cell of prostate
3
4
2
kidney glomerular epithelial cell
1
2
1
2
1
1
myoepithelial cell of mammary gland
2
4
2
renal cortical epithelial cell
1
2
1
2
1
1
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
pancreatic polypeptide-secreting cell
2
2
1
1
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Connecting Tubule Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
Medullary Thick Ascending Limb Cell
3
2
Parietal Epithelial Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Transitional Principal-Intercalated Cell
3
2
iris pigment epithelial cell
1
1
2
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
tracheal epithelial cell
1
2
2
endothelial cell of lymphatic vessel
3
1
kidney connecting tubule epithelial cell
4
mesothelial cell
2
1
1
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
type I pneumocyte
3
1
S-shaped body
3
club cell
2
1
endocardial cell
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
1
1
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
basal cell of epidermis
1
1
cardiac endothelial cell
1
1
cholangiocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
kidney inner medulla collecting duct intercalated cell
2
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
gastric goblet cell
1
granulosa cell
1
intestinal epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
pancreatic endothelial cell
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
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