Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
232
gene expression
192
accessible chromatin
102
target gene predictions
89
differential activity
72
candidate regulatory elements
39
chromatin state
37
variant allelic effects
29
binding sites
19
histone modifications
3
eQTL
2
caQTL
Date released
164
February, 2021
155
September, 2023
115
November, 2021
112
September, 2022
47
February, 2024
34
March, 2023
32
May, 2021
22
June, 2020
20
August, 2021
20
January, 2021
15
November, 2022
13
January, 2020
13
May, 2020
12
February, 2023
9
February, 2020
7
April, 2020
6
August, 2018
6
October, 2022
5
October, 2019
2
August, 2017
2
March, 2020
2
March, 2024
2
May, 2022
1
November, 2019
Available data
451
bed bed3+
304
tsv
154
bigWig
78
txt
37
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
816
Homo sapiens
Biosample type
704
primary cell
61
tissue
37
cell line
14
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
skin of body
174
large intestine
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
517
AMP
155
KPMP
115
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
491
hg19
181
GRCh38
organ_slims!
liver
skin of body
BIOSAMPLE
TYPE
816 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
1
2
pancreatic ductal cell
3
6
3
3
1
1
2
+ See 135 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
kidney epithelium
1
1
pancreatic ductal cell
2
+ See 15 more…
cell line
EndoC_BH1
8
8
1
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
glomerular visceral epithelial cell
1
1
+ See 4 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
Download