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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
235
gene expression
210
accessible chromatin
209
candidate regulatory elements
184
target gene predictions
109
chromatin state
89
differential activity
42
binding sites
38
variant allelic effects
30
histone modifications
6
eQTL
2
caQTL
Date released
306
September, 2022
259
February, 2021
155
September, 2023
127
November, 2021
51
February, 2024
39
May, 2021
34
June, 2020
34
March, 2023
20
August, 2021
20
January, 2021
15
November, 2022
13
January, 2020
13
May, 2020
12
February, 2023
9
February, 2020
7
April, 2020
7
August, 2017
7
October, 2022
6
August, 2018
5
March, 2024
5
October, 2019
4
March, 2020
3
January, 2022
2
May, 2022
1
November, 2019
Available data
718
bed bed3+
307
tsv
160
bigWig
102
bed bed9
78
txt
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
1154
Homo sapiens
Biosample type
769
primary cell
292
tissue
74
cell line
19
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
843
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
823
hg19
263
GRCh38
organ_slims!
liver
BIOSAMPLE
TYPE
1154 results
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Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
2
1
foreskin keratinocyte
11
4
4
+ See 144 more…
tissue
small intestine
1
29
17
15
1
large intestine
1
27
14
13
1
sigmoid colon
1
10
7
5
pigmented layer of retina
20
transverse colon
1
8
5
4
1
+ See 34 more…
cell line
EndoC_BH1
8
8
1
3
1
HT-29
1
2
2
1
1
1
SW480
1
2
1
1
1
1
HCT116
2
3
1
HCT-116 cell
1
1
2
+ See 13 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
+ See 2 more…
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