Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
302
gene expression
300
accessible chromatin
200
target gene predictions
candidate regulatory elements
106
differential activity
101
chromatin state
74
binding sites
57
variant allelic effects
53
histone modifications
22
eQTL
6
Fine-mapped variants
4
caQTL
2
pQTL
Date released
213
February, 2021
183
September, 2022
177
November, 2021
172
September, 2023
94
February, 2024
50
May, 2021
45
June, 2020
45
March, 2023
34
August, 2021
25
May, 2020
24
January, 2020
22
January, 2021
22
November, 2022
18
February, 2020
18
October, 2022
15
March, 2020
13
February, 2023
10
April, 2020
10
August, 2017
7
August, 2018
7
October, 2019
6
January, 2022
5
May, 2022
3
November, 2020
2
March, 2024
2
September, 2018
1
January, 2018
1
July, 2020
1
June, 2021
1
November, 2019
Available data
697
bed bed3+
387
tsv
231
bigWig
91
bed bed9
85
txt
15
bigBed narrowPeak
6
csv
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1227
Homo sapiens
Biosample type
965
primary cell
126
tissue
68
cell line
67
in vitro differentiated cells
1
stem cell
Organ
849
epithelium
493
kidney
378
connective tissue
355
brain
253
pancreas
229
musculature of body
216
vasculature
185
heart
180
lung
176
intestine
171
bodily fluid
165
blood vessel
164
blood
158
embryo
150
limb
133
liver
129
skin of body
105
large intestine
91
eye
87
extraembryonic component
74
uterus
70
adipose tissue
68
stomach
65
artery
64
bone element
59
mammary gland
51
prostate gland
47
small intestine
45
adrenal gland
44
placenta
41
lymph node
36
penis
33
gonad
33
ureter
29
thymus
28
esophagus
27
spinal cord
19
nerve
19
spleen
17
lymphatic vessel
17
testis
17
vein
15
lymphoid tissue
15
ovary
15
thyroid gland
14
skeleton
13
pituitary gland
12
bronchus
11
bone marrow
11
mouth
8
breast
7
urinary bladder
6
tongue
6
vagina
5
trachea
3
nose
1
pericardium
Project
842
AMP
177
ENCODE
170
KPMP
22
T1D
10
LungMap
4
ITG
2
community
Genome assembly (visualization)
807
hg19
356
GRCh38
2
hg18
annotation_type!
candidate regulatory elements
BIOSAMPLE
TYPE
1227 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
pQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
2
4
fibroblast
16
4
1
6
2
epithelial cell of proximal tubule
16
1
1
1
1
1
pericyte cell
10
10
1
+ See 191 more…
tissue
adipose tissue
3
2
8
6
1
1
4
pigmented layer of retina
20
subcutaneous adipose tissue
5
2
1
1
1
6
3
omental fat pad
2
2
2
2
2
3
breast epithelium
1
3
2
+ See 26 more…
cell line
EndoC_BH1
8
8
1
3
1
GM23248
1
1
1
1
1
fibroblast of cardiac tissue
2
1
2
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
4
6
6
1
1
mesenchymal stem cell
1
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
foreskin keratinocyte
1
1
1
+ See 17 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download