Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
293
accessible chromatin
289
gene expression
187
target gene predictions
161
candidate regulatory elements
104
differential activity
91
chromatin state
72
binding sites
54
variant allelic effects
52
histone modifications
9
eQTL
4
caQTL
2
pQTL
Date released
282
February, 2021
247
September, 2022
177
November, 2021
172
September, 2023
92
February, 2024
47
May, 2021
45
March, 2023
44
June, 2020
28
August, 2021
22
January, 2021
22
May, 2020
21
November, 2022
20
January, 2020
18
October, 2022
13
February, 2020
13
February, 2023
10
April, 2020
8
August, 2017
7
August, 2018
7
March, 2020
7
October, 2019
5
May, 2022
3
January, 2022
3
November, 2020
2
March, 2024
1
July, 2020
1
June, 2021
1
November, 2019
Available data
828
bed bed3+
365
tsv
226
bigWig
85
txt
83
bed bed9
15
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
1318
Homo sapiens
Biosample type
1099
primary cell
75
in vitro differentiated cells
72
tissue
71
cell line
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
933
AMP
177
ENCODE
170
KPMP
22
T1D
10
LungMap
4
ITG
2
community
Genome assembly (visualization)
918
hg19
333
GRCh38
organ_slims!
adipose tissue
BIOSAMPLE
TYPE
1318 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
pQTL
primary cell
endothelial cell
15
9
7
2
2
1
1
2
hepatocyte
8
13
3
1
1
1
2
4
fibroblast
16
4
1
6
2
epithelial cell of proximal tubule
1
16
1
2
1
1
1
pericyte cell
10
10
1
1
+ See 193 more…
in vitro differentiated cells
adipocyte
4
1
6
4
6
1
1
mesenchymal stem cell
1
3
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
hepatocyte
1
2
1
+ See 16 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
cartilage tissue
1
2
2
bone tissue
4
+ See 18 more…
cell line
EndoC_BH1
8
8
1
3
1
GM23248
1
1
2
1
1
1
fibroblast of cardiac tissue
2
1
2
HT1080
1
2
1
keratinocyte
3
1
+ See 16 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download