Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
255
gene expression
252
candidate regulatory elements
217
accessible chromatin
211
target gene predictions
135
chromatin state
92
differential activity
50
binding sites
39
variant allelic effects
31
histone modifications
5
eQTL
2
caQTL
Date released
394
September, 2022
274
February, 2021
155
September, 2023
127
November, 2021
76
February, 2024
40
May, 2021
38
March, 2023
31
June, 2020
23
August, 2021
20
January, 2021
15
November, 2022
13
May, 2020
12
February, 2023
12
January, 2020
9
February, 2020
9
October, 2022
8
April, 2020
8
March, 2020
6
August, 2018
5
October, 2019
4
August, 2017
4
March, 2024
2
January, 2022
2
May, 2022
1
July, 2020
1
November, 2019
Available data
802
bed bed3+
326
tsv
175
bigWig
131
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1289
Homo sapiens
Biosample type
823
primary cell
304
tissue
136
cell line
26
in vitro differentiated cells
Organ
949
epithelium
652
kidney
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
977
AMP
155
KPMP
127
ENCODE
20
T1D
8
LungMap
2
community
Genome assembly (visualization)
936
hg19
315
GRCh38
organ_slims!
brain
BIOSAMPLE
TYPE
1289 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
1
8
3
1
1
2
4
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
6
2
4
5
2
1
+ See 145 more…
tissue
lung
1
33
17
16
1
adrenal gland
1
28
1
17
14
1
left lung
26
13
13
right lung
22
1
11
11
pigmented layer of retina
20
+ See 20 more…
cell line
A549
21
1
19
18
2
1
EndoC_BH1
8
8
1
3
1
IMR-90
2
1
2
1
2
1
PC-9
2
1
2
1
1
1
WI38
5
1
1
+ See 13 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download