Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
246
gene expression
150
candidate regulatory elements
103
accessible chromatin
100
target gene predictions
92
differential activity
48
binding sites
41
variant allelic effects
32
histone modifications
3
chromatin state
3
eQTL
1
caQTL
Date released
238
February, 2021
155
September, 2023
148
September, 2022
44
February, 2024
38
March, 2023
38
May, 2021
31
June, 2020
20
August, 2021
20
January, 2021
15
November, 2022
14
May, 2020
11
February, 2023
10
October, 2022
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
4
March, 2024
3
August, 2017
1
July, 2020
1
May, 2022
Available data
474
bed bed3+
317
tsv
78
txt
57
bigWig
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
819
Homo sapiens
Biosample type
632
primary cell
90
cell line
68
tissue
29
in vitro differentiated cells
Organ
715
epithelium
547
kidney
336
connective tissue
314
brain
279
musculature of body
231
lung
216
pancreas
210
intestine
179
vasculature
166
limb
165
bodily fluid
162
heart
157
skin of body
156
blood
135
embryo
131
large intestine
130
blood vessel
109
extraembryonic component
96
liver
93
eye
86
stomach
67
mammary gland
66
adipose tissue
66
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
47
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
lymphatic vessel
16
ovary
16
thyroid gland
14
mouth
14
nerve
12
bronchus
12
pituitary gland
11
bone marrow
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
635
AMP
155
KPMP
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
727
hg19
GRCh38
assembly!
GRCh38
BIOSAMPLE
TYPE
819 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
differential activity
binding sites
variant allelic effects
histone modifications
chromatin state
eQTL
caQTL
primary cell
endothelial cell
9
4
1
2
2
1
1
1
epithelial cell of proximal tubule
16
2
1
1
1
glomerular endothelial cell
14
2
1
1
1
hepatocyte
8
1
1
2
1
2
1
endothelial cell of umbilical vein
6
1
4
2
1
1
+ See 126 more…
cell line
EndoC_BH1
8
7
1
3
1
GM23248
2
1
1
1
1
RPMI7951
2
1
1
SK-MEL-5
2
1
1
iPS DF 19.11
2
2
+ See 24 more…
tissue
pigmented layer of retina
20
breast epithelium
5
1
3
esophagus squamous epithelium
6
1
2
lower leg skin
6
2
suprapubic skin
3
+ See 15 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
2
1
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
1
1
1
+ See 6 more…
See all biosamples
Download