Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
254
gene expression
213
accessible chromatin
129
target gene predictions
109
candidate regulatory elements
92
differential activity
57
chromatin state
43
binding sites
41
variant allelic effects
28
histone modifications
7
eQTL
2
caQTL
Date released
201
February, 2021
163
September, 2022
155
September, 2023
131
November, 2021
76
February, 2024
38
March, 2023
34
May, 2021
26
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
9
February, 2020
7
April, 2020
7
March, 2020
6
August, 2018
6
October, 2022
5
October, 2019
4
January, 2022
3
August, 2017
3
March, 2024
May, 2022
1
July, 2020
1
November, 2019
Available data
564
bed bed3+
325
tsv
177
bigWig
78
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
975
Homo sapiens
Biosample type
821
primary cell
85
tissue
43
cell line
26
in vitro differentiated cells
Organ
947
epithelium
652
kidney
466
brain
457
connective tissue
372
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
154
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
88
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
660
AMP
155
KPMP
131
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
621
hg19
245
GRCh38
month_released!
May, 2022
BIOSAMPLE
TYPE
975 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
13
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
+ See 147 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus muscularis mucosa
1
2
5
2
1
esophagus squamous epithelium
1
2
6
2
esophagus
3
4
2
1
+ See 20 more…
cell line
EndoC_BH1
8
8
1
3
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download