Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
243
candidate regulatory elements
206
gene expression
127
target gene predictions
125
chromatin state
74
accessible chromatin
56
differential activity
18
binding sites
17
histone modifications
16
variant allelic effects
5
eQTL
Date released
366
September, 2022
257
February, 2021
140
September, 2023
28
August, 2021
26
June, 2020
20
May, 2020
14
January, 2020
9
February, 2020
7
November, 2021
4
October, 2022
3
March, 2020
3
May, 2021
2
January, 2021
2
January, 2022
2
March, 2024
1
April, 2019
1
February, 2024
1
May, 2019
1
May, 2022
Available data
491
bed bed3+
255
tsv
124
bed bed9
87
txt
49
bigWig
2
bigBed bed9
1
bed bed9+
Organism
887
Homo sapiens
Biosample type
421
tissue
363
primary cell
97
cell line
6
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
738
AMP
140
KPMP
7
ENCODE
2
T1D
Genome assembly (visualization)
617
hg19
165
GRCh38
organ_slims!
mouth
BIOSAMPLE
TYPE
887 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
chromatin state
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
tissue
kidney
29
7
14
16
10
1
2
1
1
placenta
26
15
14
1
1
2
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
+ See 33 more…
primary cell
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
1
2
1
trophoblast cell
7
5
4
1
1
glomerular visceral epithelial cell
2
5
1
1
2
kidney tubule cell
3
1
2
2
2
+ See 79 more…
cell line
HEK293
3
1
1
1
2
1
MG63
2
1
1
1
1
1
OCI-LY1
2
1
1
1
1
SJSA1
2
1
1
1
1
ACHN
2
1
1
1
+ See 19 more…
in vitro differentiated cells
trophoblast cell
2
2
1
renal cell carcinoma
1
See all biosamples
Download