Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
214
accessible chromatin
130
target gene predictions
117
candidate regulatory elements
46
binding sites
38
variant allelic effects
29
histone modifications
3
chromatin state
2
caQTL
2
eQTL
Date released
129
November, 2021
123
February, 2021
119
September, 2022
58
February, 2024
28
June, 2020
20
January, 2021
18
May, 2021
15
November, 2022
12
January, 2020
12
May, 2020
11
August, 2021
11
February, 2023
7
April, 2020
7
October, 2022
5
October, 2019
3
August, 2017
March, 2020
2
May, 2022
1
November, 2019
Available data
581
bed bed3+
326
tsv
177
bigWig
78
txt
58
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
581
Homo sapiens
Biosample type
447
primary cell
81
tissue
36
cell line
17
in vitro differentiated cells
Organ
545
epithelium
327
connective tissue
309
kidney
307
brain
278
musculature of body
238
lung
226
intestine
190
bodily fluid
181
blood
177
embryo
175
limb
167
heart
165
skin of body
160
vasculature
155
pancreas
136
large intestine
120
blood vessel
112
extraembryonic component
98
eye
98
liver
92
stomach
76
uterus
73
mammary gland
70
bone element
63
prostate gland
63
small intestine
56
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
47
adipose tissue
46
artery
37
thymus
36
gonad
32
esophagus
29
spinal cord
25
spleen
19
testis
18
lymphoid tissue
17
thyroid gland
16
ovary
16
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
6
urinary bladder
6
vagina
5
trachea
3
nose
Project
425
AMP
129
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
580
hg19
177
GRCh38
month_released!
March, 2020
BIOSAMPLE
TYPE
581 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
binding sites
variant allelic effects
histone modifications
chromatin state
caQTL
eQTL
primary cell
endothelial cell
15
7
2
2
1
2
1
hepatocyte
8
3
1
1
2
4
foreskin keratinocyte
4
11
keratinocyte
2
5
3
1
1
2
1
endothelial cell of umbilical vein
2
3
6
2
1
+ See 96 more…
tissue
pigmented layer of retina
20
ovary
1
5
8
testis
1
3
7
1
1
breast epithelium
1
3
5
esophagus squamous epithelium
1
2
6
+ See 14 more…
cell line
EndoC_BH1
8
1
NT2-D1 cell
1
1
1
2
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
+ See 8 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
1
2
mammary gland epithelial cell
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download