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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
223
accessible chromatin
212
candidate regulatory elements
188
target gene predictions
111
chromatin state
49
binding sites
38
variant allelic effects
34
histone modifications
3
eQTL
1
caQTL
1
gene expression
Date released
312
September, 2022
180
February, 2021
131
November, 2021
64
February, 2024
34
June, 2020
23
May, 2021
20
January, 2021
15
November, 2022
14
January, 2020
12
May, 2020
11
August, 2021
10
February, 2023
7
April, 2020
7
August, 2017
7
October, 2022
5
October, 2019
4
March, 2020
2
May, 2022
1
February, 2020
1
November, 2019
Available data
752
bed bed3+
169
bigWig
104
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
860
Homo sapiens
Biosample type
495
primary cell
284
tissue
63
cell line
18
in vitro differentiated cells
Organ
600
epithelium
423
brain
387
connective tissue
387
kidney
367
musculature of body
309
lung
283
intestine
237
limb
229
heart
217
bodily fluid
206
blood
205
embryo
204
vasculature
199
skin of body
186
pancreas
170
large intestine
159
blood vessel
145
extraembryonic component
124
liver
116
stomach
107
eye
87
mammary gland
85
bone element
83
small intestine
80
uterus
76
prostate gland
72
placenta
71
adrenal gland
69
adipose tissue
64
penis
64
ureter
62
lymph node
60
artery
49
thymus
45
gonad
41
spinal cord
40
esophagus
32
spleen
23
lymphoid tissue
23
testis
22
nerve
21
ovary
21
thyroid gland
21
vein
18
skeleton
17
mouth
16
bronchus
16
lymphatic vessel
13
bone marrow
11
breast
11
pituitary gland
9
tongue
9
urinary bladder
8
vagina
5
trachea
4
nose
Project
702
AMP
131
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
860
hg19
297
GRCh38
BIOSAMPLE
TYPE
860 results
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Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
gene expression
primary cell
endothelial cell
15
7
2
2
1
1
1
1
hepatocyte
8
1
3
1
1
2
4
endothelial cell of umbilical vein
2
6
4
5
2
foreskin keratinocyte
11
4
4
keratinocyte
2
3
5
3
1
1
2
+ See 95 more…
tissue
small intestine
1
29
17
15
large intestine
1
27
14
13
1
sigmoid colon
1
10
7
5
pigmented layer of retina
20
transverse colon
1
8
5
4
+ See 28 more…
cell line
EndoC_BH1
8
1
1
HT-29
1
2
2
1
1
1
SW480
1
2
1
1
1
1
HCT116
2
3
1
HCT-116 cell
1
1
2
+ See 13 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
mammary gland epithelial cell
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
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