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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
257
gene expression
228
candidate regulatory elements
226
accessible chromatin
197
target gene predictions
119
chromatin state
92
differential activity
51
binding sites
41
variant allelic effects
34
histone modifications
8
eQTL
3
Fine-mapped variants
2
caQTL
Date released
336
September, 2022
274
February, 2021
155
September, 2023
131
November, 2021
79
February, 2024
41
May, 2021
38
March, 2023
37
June, 2020
23
August, 2021
20
January, 2021
15
January, 2020
15
May, 2020
15
November, 2022
12
February, 2023
11
March, 2020
10
February, 2020
8
October, 2022
7
April, 2020
7
August, 2017
6
August, 2018
5
March, 2024
5
October, 2019
4
January, 2022
2
May, 2022
1
July, 2020
1
November, 2019
Available data
782
bed bed3+
332
tsv
178
bigWig
112
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1258
Homo sapiens
Biosample type
827
primary cell
328
tissue
77
cell line
26
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
943
AMP
155
KPMP
131
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
901
hg19
310
GRCh38
BIOSAMPLE
TYPE
1258 results
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Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
chromatin state
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
1
8
3
1
1
2
4
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
6
2
4
5
2
1
+ See 148 more…
tissue
small intestine
29
1
17
15
1
large intestine
27
1
14
13
1
spinal cord
14
1
8
7
1
sigmoid colon
10
1
7
5
pigmented layer of retina
20
+ See 36 more…
cell line
EndoC_BH1
8
8
1
3
1
HT-29
2
1
2
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
HCT-116 cell
1
1
2
+ See 14 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
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