Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
159
candidate regulatory elements
101
target gene predictions
87
accessible chromatin
83
chromatin state
24
binding sites
17
histone modifications
6
variant allelic effects
4
eQTL
4
gene expression
Date released
233
September, 2022
116
February, 2021
29
November, 2021
24
February, 2023
22
November, 2022
20
June, 2020
8
February, 2024
8
May, 2021
6
October, 2022
5
August, 2017
3
January, 2022
3
March, 2024
2
February, 2020
2
January, 2020
2
March, 2020
2
May, 2020
Available data
399
bed bed3+
78
bed bed9
50
bigWig
5
tsv
Organism
485
Homo sapiens
Biosample type
304
tissue
92
primary cell
80
cell line
9
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
456
AMP
29
ENCODE
Genome assembly (visualization)
477
hg19
115
GRCh38
BIOSAMPLE
TYPE
485 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
binding sites
histone modifications
variant allelic effects
eQTL
gene expression
tissue
small intestine
29
17
1
15
1
large intestine
27
14
1
13
1
retina
6
3
23
3
1
1
1
1
1
sigmoid colon
10
7
1
5
pigmented layer of retina
20
+ See 20 more…
primary cell
mammary gland epithelial cell
3
4
1
3
1
1
mammary epithelial cell
3
1
1
1
4
retinal pigment epithelial cell
2
1
3
1
2
1
fibroblast of mammary gland
2
1
1
1
2
1
myoepithelial cell of mammary gland
4
2
2
+ See 13 more…
cell line
MCF-7
9
6
1
5
3
2
HT-29
2
2
1
1
1
1
WERI-Rb-1
2
1
1
1
2
1
SW480
2
1
1
1
1
1
T47D
3
2
2
+ See 9 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
mammary gland epithelial cell
1
1
1
See all biosamples
Download