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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
226
gene expression
182
candidate regulatory elements
95
target gene predictions
94
chromatin state
67
accessible chromatin
60
differential activity
20
binding sites
20
histone modifications
20
variant allelic effects
12
eQTL
3
Fine-mapped variants
1
caQTL
Date released
271
September, 2022
214
February, 2021
140
September, 2023
38
August, 2021
30
February, 2024
22
May, 2020
20
June, 2020
17
January, 2020
13
March, 2020
11
February, 2020
4
March, 2023
3
August, 2017
3
May, 2021
3
October, 2022
2
January, 2022
2
March, 2024
2
May, 2022
1
April, 2019
1
July, 2020
1
May, 2019
1
November, 2019
1
September, 2018
Available data
402
bed bed3+
279
tsv
91
bed bed9
87
txt
52
bigWig
3
bigBed bed9
3
csv
1
bam
Organism
800
Homo sapiens
Biosample type
364
primary cell
359
tissue
69
cell line
8
in vitro differentiated cells
Organ
822
epithelium
649
kidney
466
brain
408
connective tissue
364
musculature of body
302
lung
270
intestine
260
vasculature
259
pancreas
245
heart
244
limb
218
bodily fluid
213
embryo
207
blood
201
blood vessel
194
skin of body
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
88
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
75
artery
71
placenta
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
lymphatic vessel
18
skeleton
14
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
660
AMP
140
KPMP
ENCODE
Genome assembly (visualization)
503
hg19
157
GRCh38
2
hg18
award.project!
ENCODE
BIOSAMPLE
TYPE
800 results
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Clear Filters
gene expression
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
13
1
2
1
7
1
4
2
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
1
1
2
1
endothelial cell of hepatic sinusoid
4
4
6
glomerular visceral epithelial cell
5
2
1
1
2
+ See 66 more…
tissue
kidney
7
29
14
16
10
1
2
1
1
liver
1
13
10
9
4
1
1
2
7
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
+ See 17 more…
cell line
HepG2
2
3
2
2
3
5
HEK293
3
1
1
1
2
1
HuH-7
1
1
1
1
1
1
ACHN
2
1
1
1
Caki2
2
1
1
1
+ See 11 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
renal cell carcinoma
1
See all biosamples
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