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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
226
gene expression
210
candidate regulatory elements
111
target gene predictions
109
chromatin state
71
accessible chromatin
60
differential activity
32
binding sites
25
histone modifications
21
variant allelic effects
12
eQTL
3
Fine-mapped variants
1
caQTL
Date released
313
September, 2022
242
February, 2021
140
September, 2023
38
August, 2021
31
February, 2024
24
June, 2020
22
May, 2020
17
January, 2020
13
March, 2020
11
February, 2020
6
October, 2022
5
May, 2021
4
August, 2017
4
March, 2023
2
January, 2022
2
March, 2024
2
May, 2022
1
April, 2019
1
July, 2020
1
May, 2019
1
November, 2019
1
September, 2018
Available data
469
bed bed3+
279
tsv
105
bed bed9
87
txt
52
bigWig
3
bigBed bed9
3
csv
1
bam
Organism
881
Homo sapiens
Biosample type
404
primary cell
361
tissue
105
cell line
11
in vitro differentiated cells
Organ
822
epithelium
649
kidney
466
brain
410
connective tissue
364
musculature of body
302
lung
270
intestine
260
vasculature
259
pancreas
245
heart
244
limb
218
bodily fluid
213
embryo
207
blood
201
blood vessel
194
skin of body
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
88
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
75
artery
71
placenta
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
lymphatic vessel
18
skeleton
14
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
741
AMP
140
KPMP
ENCODE
Genome assembly (visualization)
584
hg19
171
GRCh38
2
hg18
award.project!
ENCODE
BIOSAMPLE
TYPE
881 results
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Clear Filters
gene expression
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
13
1
2
1
7
1
4
2
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
1
1
2
1
endothelial cell of hepatic sinusoid
4
4
6
glomerular visceral epithelial cell
5
2
1
1
2
+ See 71 more…
tissue
kidney
7
29
14
16
10
1
2
1
1
liver
1
13
10
9
4
1
1
2
7
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
+ See 18 more…
cell line
MCF-7
9
6
5
1
3
2
HepG2
2
3
2
2
3
5
HEK293
3
1
1
1
2
1
T47D
3
2
2
HuH-7
1
1
1
1
1
1
+ See 14 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
renal cell carcinoma
1
See all biosamples
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