Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
286
candidate regulatory elements
251
gene expression
210
target gene predictions
152
chromatin state
150
accessible chromatin
84
binding sites
70
differential activity
56
histone modifications
32
variant allelic effects
27
eQTL
6
Fine-mapped variants
3
pQTL
2
caQTL
Date released
420
September, 2022
371
February, 2021
157
September, 2023
53
November, 2021
47
February, 2024
47
June, 2020
41
August, 2021
33
October, 2022
29
May, 2020
24
January, 2020
20
May, 2021
18
February, 2020
12
March, 2020
9
August, 2017
7
January, 2022
7
March, 2023
7
November, 2022
3
April, 2020
3
March, 2024
3
May, 2022
3
November, 2020
2
January, 2021
2
May, 2024
2
October, 2019
2
September, 2018
1
April, 2019
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2021
1
May, 2019
Available data
829
bed bed3+
316
tsv
143
bed bed9
93
txt
91
bigWig
4
bigBed bed9
1
bigBed narrowPeak
Organism
1329
Homo sapiens
Biosample type
600
primary cell
400
tissue
277
cell line
51
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1110
AMP
155
KPMP
53
ENCODE
4
ITG
3
LungMap
2
T1D
2
community
Genome assembly (visualization)
991
hg19
280
GRCh38
2
hg18
organ_slims!
skeleton
BIOSAMPLE
TYPE
1329 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
chromatin state
accessible chromatin
binding sites
differential activity
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
pQTL
caQTL
primary cell
fibroblast
4
16
1
6
2
epithelial cell of proximal tubule
2
16
1
1
1
1
1
pericyte cell
1
10
1
10
glomerular endothelial cell
2
14
1
1
2
1
osteoblast
2
2
2
1
5
3
2
+ See 113 more…
tissue
kidney
29
7
14
16
10
1
2
1
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
left kidney
18
9
9
+ See 29 more…
cell line
K562
7
23
7
1
2
1
GM12878
2
8
2
1
2
1
HEK293
3
1
1
1
2
1
GM06990
2
1
1
1
2
1
GM19240
1
2
1
1
2
1
+ See 50 more…
in vitro differentiated cells
adipocyte
4
1
6
6
4
1
1
mesenchymal stem cell
3
3
2
1
1
1
chondrocyte
5
fibroblast
1
1
Adipose SGBS cell line (adipocyte)
1
+ See 9 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download