Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
229
gene expression
186
candidate regulatory elements
99
target gene predictions
96
chromatin state
78
accessible chromatin
62
differential activity
22
binding sites
21
histone modifications
20
variant allelic effects
12
eQTL
3
Fine-mapped variants
1
caQTL
Date released
277
September, 2022
219
February, 2021
145
September, 2023
38
August, 2021
30
February, 2024
22
May, 2020
21
June, 2020
17
January, 2020
13
March, 2020
11
February, 2020
11
November, 2021
4
March, 2023
3
August, 2017
3
May, 2021
3
October, 2022
2
January, 2022
2
March, 2024
2
May, 2022
1
April, 2019
1
April, 2020
1
July, 2020
1
May, 2019
1
November, 2019
1
September, 2018
Available data
424
bed bed3+
284
tsv
93
bed bed9
87
txt
62
bigWig
3
bigBed bed9
3
csv
1
bam
Organism
829
Homo sapiens
Biosample type
389
primary cell
359
tissue
71
cell line
10
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
672
AMP
145
KPMP
11
ENCODE
1
LungMap
Genome assembly (visualization)
527
hg19
170
GRCh38
2
hg18
BIOSAMPLE
TYPE
829 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
13
1
3
1
8
1
4
2
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
1
1
2
1
endothelial cell of hepatic sinusoid
4
6
6
glomerular visceral epithelial cell
5
2
1
1
2
+ See 72 more…
tissue
kidney
7
29
14
16
10
1
2
1
1
liver
1
13
10
9
4
1
1
2
7
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
+ See 17 more…
cell line
HepG2
2
3
2
2
3
5
HEK293
3
1
1
1
2
1
HuH-7
1
1
1
1
1
1
ACHN
2
1
1
1
Caki2
2
1
1
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
dermis microvascular lymphatic vessel endothelial cell
1
1
renal cell carcinoma
1
See all biosamples
Download