Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
324
candidate regulatory elements
225
gene expression
184
target gene predictions
180
chromatin state
111
accessible chromatin
63
histone modifications
56
differential activity
36
Fine-mapped variants
34
binding sites
34
eQTL
33
variant allelic effects
Date released
495
September, 2022
352
February, 2021
143
September, 2023
43
January, 2020
43
June, 2020
41
March, 2020
39
May, 2020
28
August, 2021
27
February, 2020
20
January, 2022
12
May, 2021
10
October, 2022
6
August, 2017
6
November, 2021
5
May, 2019
3
March, 2024
2
February, 2024
2
January, 2021
1
April, 2019
1
May, 2022
1
November, 2019
Available data
744
bed bed3+
322
tsv
173
bed bed9
87
txt
69
bigWig
8
bigBed bed9
1
bed bed9+
Organism
1279
Homo sapiens
Biosample type
732
tissue
368
primary cell
174
cell line
5
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1132
AMP
140
KPMP
6
ENCODE
2
T1D
Genome assembly (visualization)
967
hg19
299
GRCh38
BIOSAMPLE
TYPE
1280 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
chromatin state
accessible chromatin
histone modifications
differential activity
Fine-mapped variants
binding sites
eQTL
variant allelic effects
tissue
kidney
29
7
14
16
10
2
1
1
1
brain
29
1
16
18
2
3
1
2
1
placenta
26
15
14
1
2
1
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
+ See 89 more…
primary cell
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
1
2
1
glomerular visceral epithelial cell
2
5
1
1
2
kidney tubule cell
3
1
2
2
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
+ See 81 more…
cell line
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
HEK293
3
1
1
1
1
2
SK-N-MC
2
1
1
1
1
2
+ See 33 more…
in vitro differentiated cells
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
renal cell carcinoma
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download