Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
116
candidate regulatory elements
76
target gene predictions
61
chromatin state
24
accessible chromatin
20
binding sites
15
eQTL
15
gene expression
11
histone modifications
6
Fine-mapped variants
4
variant allelic effects
2
differential activity
Date released
164
September, 2022
97
February, 2021
12
June, 2020
12
November, 2021
10
May, 2021
9
March, 2020
6
August, 2017
6
August, 2021
6
February, 2024
5
February, 2020
5
January, 2022
4
January, 2020
4
October, 2022
3
May, 2020
2
March, 2024
2
September, 2018
1
January, 2018
1
November, 2022
Available data
259
bed bed3+
55
bed bed9
24
tsv
11
bigWig
1
bigBed bed9
Organism
350
Homo sapiens
Biosample type
220
tissue
73
cell line
53
primary cell
4
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
338
AMP
12
ENCODE
Genome assembly (visualization)
326
hg19
86
GRCh38
2
hg18
BIOSAMPLE
TYPE
350 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
eQTL
gene expression
histone modifications
Fine-mapped variants
variant allelic effects
differential activity
tissue
large intestine
27
14
13
1
1
adipose tissue
7
8
6
2
1
4
3
1
sigmoid colon
10
7
5
1
subcutaneous adipose tissue
2
1
2
6
5
3
1
1
transverse colon
8
5
4
1
1
+ See 16 more…
cell line
MCF-7
9
6
5
1
3
2
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
T47D
3
2
2
HCT116
2
3
1
+ See 8 more…
primary cell
mammary gland epithelial cell
3
4
3
1
1
1
mammary epithelial cell
3
1
1
1
4
fibroblast of mammary gland
2
1
1
1
2
1
myoepithelial cell of mammary gland
4
2
2
luminal epithelial cell of mammary gland
1
3
1
2
+ See 2 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
white adipose cell
1
See all biosamples
Download