Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
134
candidate regulatory elements
97
target gene predictions
89
chromatin state
66
accessible chromatin
62
histone modifications
39
Fine-mapped variants
28
binding sites
18
eQTL
13
variant allelic effects
1
caQTL
Date released
226
September, 2022
131
February, 2021
44
March, 2020
26
June, 2020
21
January, 2020
16
February, 2024
14
May, 2020
14
May, 2021
13
February, 2020
9
August, 2017
8
August, 2021
7
October, 2022
5
November, 2021
4
May, 2019
3
September, 2023
2
May, 2022
2
November, 2019
1
January, 2022
1
September, 2018
Available data
409
bed bed3+
80
bed bed9
52
tsv
35
bigWig
7
bigBed bed9
1
bam
Organism
546
Homo sapiens
Biosample type
360
tissue
104
cell line
75
primary cell
7
in vitro differentiated cells
1
stem cell
Organ
600
epithelium
423
brain
387
connective tissue
387
kidney
367
musculature of body
309
lung
283
intestine
237
limb
229
heart
217
bodily fluid
206
blood
205
embryo
204
vasculature
199
skin of body
186
pancreas
170
large intestine
159
blood vessel
145
extraembryonic component
124
liver
116
stomach
107
eye
87
mammary gland
85
bone element
83
small intestine
80
uterus
76
prostate gland
72
placenta
71
adrenal gland
69
adipose tissue
64
penis
64
ureter
62
lymph node
60
artery
49
thymus
45
gonad
41
spinal cord
40
esophagus
32
spleen
23
lymphoid tissue
23
testis
22
nerve
21
ovary
21
thyroid gland
21
vein
18
skeleton
17
mouth
16
bronchus
16
lymphatic vessel
13
bone marrow
11
breast
11
pituitary gland
9
tongue
9
urinary bladder
8
vagina
5
trachea
4
nose
Project
542
AMP
5
ENCODE
Genome assembly (visualization)
547
hg19
212
GRCh38
2
hg18
BIOSAMPLE
TYPE
547 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
Fine-mapped variants
binding sites
eQTL
variant allelic effects
caQTL
tissue
brain
29
16
18
2
3
1
1
liver
13
10
9
4
2
1
5
1
caudate nucleus
5
3
4
2
1
3
1
layer of hippocampus
6
3
4
1
1
substantia nigra
5
2
3
1
3
1
+ See 55 more…
cell line
HepG2
2
3
2
2
5
2
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 13 more…
primary cell
hepatocyte
1
3
1
8
4
1
2
endothelial cell of hepatic sinusoid
6
6
choroid plexus epithelial cell
2
1
1
1
1
1
hepatic stellate cell
1
1
1
3
1
astrocyte of the cerebellum
2
1
1
1
1
+ See 8 more…
in vitro differentiated cells
hepatocyte
2
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
hippocampal neuron
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download