Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
143
candidate regulatory elements
95
target gene predictions
83
chromatin state
67
accessible chromatin
58
gene expression
44
binding sites
34
histone modifications
20
variant allelic effects
19
differential activity
18
eQTL
12
Fine-mapped variants
4
caQTL
Date released
217
September, 2022
137
February, 2021
35
September, 2023
33
February, 2024
22
March, 2020
19
January, 2020
19
June, 2020
19
November, 2021
18
May, 2020
12
May, 2021
11
August, 2021
9
October, 2022
8
January, 2022
7
February, 2020
5
August, 2017
4
February, 2023
4
March, 2023
4
March, 2024
4
November, 2019
3
April, 2020
2
May, 2022
2
October, 2019
1
July, 2020
1
May, 2019
1
September, 2018
Available data
408
bed bed3+
87
tsv
78
bed bed9
53
bigWig
9
bigBed bed9
3
csv
2
txt
1
bam
Organism
597
Homo sapiens
Biosample type
294
primary cell
180
tissue
107
cell line
16
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
540
AMP
35
KPMP
19
ENCODE
3
LungMap
Genome assembly (visualization)
504
hg19
177
GRCh38
2
hg18
BIOSAMPLE
TYPE
597 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
binding sites
histone modifications
variant allelic effects
differential activity
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
1
3
1
8
13
1
4
2
endothelial cell of umbilical vein
6
4
5
2
2
1
foreskin keratinocyte
11
4
4
keratinocyte
3
5
3
2
1
2
1
endothelial cell of hepatic sinusoid
6
4
6
+ See 40 more…
tissue
liver
13
10
9
4
1
1
2
1
7
1
coronary artery
3
3
3
3
1
2
2
3
1
tibial artery
3
2
3
3
1
2
2
3
ascending aorta
4
2
3
1
1
1
1
3
aorta
4
4
4
1
+ See 16 more…
cell line
HepG2
2
3
2
2
3
5
GM23248
2
1
1
1
1
1
HuH-7
1
1
1
1
1
1
RPMI7951
2
1
1
1
SK-MEL-5
2
1
1
1
+ See 22 more…
in vitro differentiated cells
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
+ See 1 more…
See all biosamples
Download