Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
207
candidate regulatory elements
129
target gene predictions
115
chromatin state
65
histone modifications
63
accessible chromatin
46
binding sites
36
Fine-mapped variants
32
eQTL
21
gene expression
18
variant allelic effects
Date released
306
September, 2022
205
February, 2021
38
March, 2020
37
June, 2020
29
January, 2020
21
January, 2022
19
May, 2020
18
February, 2020
17
May, 2021
12
October, 2022
10
November, 2021
7
August, 2017
4
May, 2019
3
March, 2024
3
September, 2023
2
February, 2024
1
November, 2019
Available data
528
bed bed3+
108
bed bed9
69
tsv
26
bigWig
6
bigBed bed9
Organism
731
Homo sapiens
Biosample type
374
tissue
209
cell line
135
primary cell
13
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
722
AMP
10
ENCODE
Genome assembly (visualization)
684
hg19
207
GRCh38
BIOSAMPLE
TYPE
732 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
histone modifications
accessible chromatin
binding sites
Fine-mapped variants
eQTL
gene expression
variant allelic effects
tissue
brain
29
16
18
3
2
1
2
1
1
caudate nucleus
5
3
4
1
2
3
2
1
1
substantia nigra
5
2
3
1
3
3
1
cerebellum
3
2
2
1
1
3
2
2
frontal cortex
2
2
2
2
3
2
2
1
+ See 63 more…
cell line
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
GM12864
2
1
1
1
1
2
GM12865
2
1
1
1
1
2
+ See 44 more…
primary cell
foreskin keratinocyte
11
4
4
keratinocyte
3
5
3
2
2
1
1
foreskin fibroblast
6
2
1
2
1
4
fibroblast of dermis
4
4
3
1
dermis blood vessel endothelial cell
6
2
2
+ See 17 more…
in vitro differentiated cells
foreskin keratinocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
+ See 2 more…
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download