Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
66
candidate regulatory elements
39
target gene predictions
31
chromatin state
27
binding sites
20
accessible chromatin
10
histone modifications
3
eQTL
2
gene expression
1
variant allelic effects
Date released
90
September, 2022
67
February, 2021
16
June, 2020
8
November, 2021
6
October, 2022
4
May, 2021
3
January, 2022
2
March, 2024
1
August, 2017
1
February, 2024
1
March, 2020
Available data
164
bed bed3+
30
bed bed9
4
bigWig
2
tsv
Organism
199
Homo sapiens
Biosample type
105
cell line
50
primary cell
41
tissue
3
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
191
AMP
8
ENCODE
Genome assembly (visualization)
194
hg19
41
GRCh38
BIOSAMPLE
TYPE
199 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
accessible chromatin
histone modifications
eQTL
gene expression
variant allelic effects
cell line
MCF-7
9
6
5
3
1
2
GM12864
2
1
1
2
1
1
GM12865
2
1
1
2
1
1
MM.1S
2
2
1
1
1
1
T47D
3
2
2
+ See 15 more…
primary cell
mammary gland epithelial cell
3
4
3
1
1
1
mammary epithelial cell
3
1
1
4
1
fibroblast of mammary gland
2
1
1
2
1
1
myoepithelial cell of mammary gland
4
2
2
luminal epithelial cell of mammary gland
1
3
1
2
+ See 3 more…
tissue
ovary
8
6
4
1
1
1
testis
7
3
3
1
1
1
1
1
mammary gland
1
1
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
See all biosamples
Download