Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
211
accessible chromatin
129
target gene predictions
56
candidate regulatory elements
37
variant allelic effects
13
binding sites
4
histone modifications
3
chromatin state
2
caQTL
2
eQTL
Date released
February, 2021
127
November, 2021
119
September, 2022
58
February, 2024
26
June, 2020
20
January, 2021
18
May, 2021
15
November, 2022
12
January, 2020
12
May, 2020
11
August, 2021
11
February, 2023
8
October, 2022
7
April, 2020
5
October, 2019
3
August, 2017
2
March, 2020
2
May, 2022
1
November, 2019
Available data
457
bed bed3+
239
tsv
173
bigWig
58
bed bed9
12
txt
11
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
457
Homo sapiens
Biosample type
370
primary cell
42
tissue
34
cell line
11
in vitro differentiated cells
Organ
436
epithelium
244
connective tissue
214
kidney
200
brain
190
musculature of body
169
lung
157
intestine
135
pancreas
127
heart
125
embryo
118
vasculature
117
limb
116
bodily fluid
111
blood
97
skin of body
91
large intestine
89
blood vessel
81
eye
79
extraembryonic component
79
liver
66
uterus
64
stomach
46
small intestine
45
mammary gland
43
adrenal gland
38
bone element
38
placenta
35
adipose tissue
34
prostate gland
33
ureter
32
artery
27
lymph node
27
thymus
26
penis
25
gonad
23
esophagus
20
spinal cord
16
spleen
13
lymphoid tissue
13
ovary
13
thyroid gland
11
nerve
11
testis
10
pituitary gland
10
vein
9
bronchus
9
lymphatic vessel
9
mouth
6
bone marrow
6
breast
6
skeleton
6
urinary bladder
5
tongue
4
vagina
3
nose
1
trachea
Project
303
AMP
127
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
456
hg19
175
GRCh38
month_released!
February, 2021
BIOSAMPLE
TYPE
457 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
variant allelic effects
binding sites
histone modifications
chromatin state
caQTL
eQTL
primary cell
endothelial cell
15
7
2
2
1
hepatocyte
8
3
1
2
3
endothelial cell of hepatic sinusoid
6
6
keratinocyte
2
5
2
1
1
pancreatic beta cell
8
2
1
+ See 90 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
2
esophagus squamous epithelium
1
2
2
pancreatic ductal cell
2
endothelial cell
1
+ See 8 more…
cell line
MCF-7
1
6
5
1
EndoC_BH1
8
1
1
T47D
2
2
colon epithelial cell
1
1
glomerular visceral epithelial cell
1
1
+ See 3 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
1
foreskin keratinocyte
1
mammary gland epithelial cell
1
See all biosamples
Download