Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
72
accessible chromatin
63
target gene predictions
52
candidate regulatory elements
gene expression
33
differential activity
32
chromatin state
17
binding sites
15
eQTL
12
variant allelic effects
11
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
86
September, 2022
53
February, 2021
38
March, 2023
24
November, 2021
23
February, 2024
20
January, 2021
17
May, 2021
8
August, 2021
8
June, 2020
7
March, 2020
6
May, 2020
6
October, 2019
4
August, 2017
4
January, 2022
3
January, 2020
3
October, 2022
2
November, 2019
1
April, 2019
1
February, 2020
1
February, 2023
1
June, 2021
Available data
232
bed bed3+
60
bigWig
37
tsv
27
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
316
Homo sapiens
Biosample type
148
primary cell
103
tissue
62
cell line
3
in vitro differentiated cells
Organ
696
epithelium
450
kidney
447
brain
411
connective tissue
364
musculature of body
310
lung
286
intestine
239
limb
234
heart
230
vasculature
229
pancreas
217
bodily fluid
206
blood
205
embryo
202
skin of body
179
blood vessel
172
large intestine
146
extraembryonic component
132
liver
117
stomach
108
eye
87
mammary gland
85
bone element
84
small intestine
81
uterus
77
prostate gland
76
adipose tissue
73
placenta
72
adrenal gland
67
artery
64
penis
64
ureter
62
lymph node
49
thymus
48
gonad
43
esophagus
42
spinal cord
33
spleen
25
testis
23
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
18
lymphatic vessel
18
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
12
pituitary gland
9
tongue
9
urinary bladder
9
vagina
5
trachea
4
nose
Project
270
AMP
24
ENCODE
20
T1D
2
community
Genome assembly (visualization)
273
hg19
81
GRCh38
annotation_type!
gene expression
BIOSAMPLE
TYPE
316 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
eQTL
variant allelic effects
histone modifications
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
6
3
3
1
1
2
pancreatic beta cell
8
3
3
1
pancreatic alpha cell
7
3
3
1
mammary gland epithelial cell
1
4
3
3
1
1
pancreatic acinar cell
6
3
3
1
+ See 15 more…
tissue
islet of Langerhans
6
1
3
2
13
1
1
2
2
2
body of pancreas
5
8
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
endocrine pancreas
4
7
4
mammary gland
1
1
+ See 7 more…
cell line
MCF-7
1
6
9
5
3
2
EndoC_BH1
8
1
3
1
T47D
2
3
2
Panc1
2
2
1
8988T
1
1
1
+ See 4 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
See all biosamples
Download