Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
72
accessible chromatin
63
target gene predictions
52
candidate regulatory elements
48
gene expression
33
differential activity
32
chromatin state
17
binding sites
12
variant allelic effects
11
eQTL
11
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
86
September, 2022
59
February, 2021
47
March, 2023
35
May, 2021
26
February, 2024
24
November, 2021
20
January, 2021
9
March, 2020
8
August, 2021
8
June, 2020
7
August, 2018
6
May, 2020
6
October, 2019
4
August, 2017
4
January, 2020
January, 2022
3
October, 2022
2
February, 2020
2
November, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
Available data
232
bed bed3+
76
tsv
60
bigWig
27
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
360
Homo sapiens
Biosample type
172
primary cell
112
tissue
70
cell line
6
in vitro differentiated cells
Organ
949
epithelium
651
kidney
452
connective tissue
448
brain
374
musculature of body
310
lung
286
intestine
273
pancreas
263
vasculature
252
heart
242
limb
218
bodily fluid
215
embryo
207
blood
201
blood vessel
201
skin of body
172
large intestine
155
liver
145
extraembryonic component
118
stomach
109
eye
89
bone element
87
mammary gland
86
adipose tissue
83
small intestine
82
uterus
77
prostate gland
72
adrenal gland
72
artery
72
placenta
64
penis
64
ureter
62
lymph node
49
thymus
47
gonad
42
esophagus
42
spinal cord
33
spleen
24
lymphoid tissue
24
nerve
24
testis
23
vein
22
ovary
22
thyroid gland
21
lymphatic vessel
18
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
12
pituitary gland
10
tongue
10
urinary bladder
9
vagina
5
trachea
4
nose
1
pericardium
Project
314
AMP
24
ENCODE
20
T1D
2
community
Genome assembly (visualization)
273
hg19
77
GRCh38
month_released!
January, 2022
BIOSAMPLE
TYPE
360 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
differential activity
chromatin state
binding sites
variant allelic effects
eQTL
histone modifications
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
6
3
3
3
1
1
2
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
+ See 17 more…
tissue
islet of Langerhans
6
1
11
3
2
1
10
1
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
endocrine pancreas
4
7
4
mammary gland
1
1
+ See 7 more…
cell line
MCF-7
1
6
9
5
3
2
EndoC_BH1
8
1
8
3
1
T47D
2
3
2
Panc1
2
2
1
8988T
1
1
1
+ See 4 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
See all biosamples
Download