Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
255
gene expression
215
accessible chromatin
125
target gene predictions
106
candidate regulatory elements
differential activity
57
chromatin state
43
binding sites
43
variant allelic effects
28
histone modifications
5
eQTL
3
Fine-mapped variants
2
caQTL
Date released
199
February, 2021
160
September, 2022
127
November, 2021
93
September, 2023
76
February, 2024
34
May, 2021
26
June, 2020
23
August, 2021
20
January, 2021
18
May, 2020
15
January, 2020
15
November, 2022
12
February, 2020
11
February, 2023
9
March, 2020
9
March, 2023
7
April, 2020
6
August, 2018
6
October, 2022
5
October, 2019
3
August, 2017
2
March, 2024
2
May, 2022
2
November, 2019
1
January, 2022
1
July, 2020
Available data
561
bed bed3+
240
tsv
178
bigWig
78
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
882
Homo sapiens
Biosample type
730
primary cell
86
tissue
40
cell line
26
in vitro differentiated cells
Organ
857
epithelium
596
kidney
466
brain
444
connective tissue
374
musculature of body
311
lung
289
intestine
255
heart
248
vasculature
244
limb
244
pancreas
218
bodily fluid
215
embryo
207
blood
204
skin of body
192
blood vessel
174
large intestine
152
liver
146
extraembryonic component
119
stomach
109
eye
89
bone element
87
adipose tissue
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
artery
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
635
AMP
127
ENCODE
93
KPMP
20
T1D
7
LungMap
Genome assembly (visualization)
622
hg19
245
GRCh38
annotation_type!
differential activity
BIOSAMPLE
TYPE
882 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
+ See 146 more…
tissue
tibial nerve
2
3
3
6
4
2
2
3
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
kidney epithelium
1
1
+ See 16 more…
cell line
EndoC_BH1
8
8
1
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download