Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
169
candidate regulatory elements
119
gene expression
82
chromatin state
80
target gene predictions
50
accessible chromatin
16
variant allelic effects
10
binding sites
7
histone modifications
6
eQTL
Date released
240
September, 2022
196
February, 2021
28
August, 2021
19
May, 2020
18
June, 2020
14
January, 2020
9
February, 2020
3
January, 2022
3
March, 2020
3
March, 2024
3
October, 2022
1
April, 2019
1
February, 2024
1
May, 2019
Available data
328
bed bed3+
112
tsv
87
txt
82
bed bed9
33
bigWig
2
bigBed bed9
Organism
539
Homo sapiens
Biosample type
319
tissue
167
primary cell
48
cell line
5
in vitro differentiated cells
Organ
638
epithelium
509
kidney
466
brain
384
connective tissue
364
musculature of body
299
lung
270
intestine
245
heart
244
limb
237
pancreas
222
vasculature
218
bodily fluid
213
embryo
207
blood
194
skin of body
179
blood vessel
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
86
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
71
placenta
70
artery
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
skeleton
13
breast
13
bronchus
13
pituitary gland
12
lymphatic vessel
10
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
539
AMP
140
KPMP
3
ENCODE
Genome assembly (visualization)
411
hg19
109
GRCh38
BIOSAMPLE
TYPE
539 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
chromatin state
target gene predictions
accessible chromatin
variant allelic effects
binding sites
histone modifications
eQTL
tissue
kidney
29
7
16
14
10
1
1
2
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
left kidney
18
9
9
+ See 16 more…
primary cell
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
1
2
1
glomerular visceral epithelial cell
2
5
1
1
2
kidney tubule cell
3
1
2
2
2
kidney glomerular epithelial cell
2
1
1
1
2
1
+ See 34 more…
cell line
HEK293
3
1
1
1
2
1
NT2-D1 cell
1
1
1
1
2
ACHN
2
1
1
1
Caki2
2
1
1
1
RCC 7860
2
1
1
1
+ See 9 more…
in vitro differentiated cells
olfactory neurosphere cell line
1
1
1
1
renal cell carcinoma
1
See all biosamples
Download