Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
117
target gene predictions
74
accessible chromatin
64
candidate regulatory elements
58
gene expression
36
chromatin state
33
differential activity
18
binding sites
16
histone modifications
15
eQTL
11
variant allelic effects
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
98
September, 2022
76
February, 2024
75
February, 2021
47
March, 2023
38
May, 2021
20
January, 2021
18
November, 2021
16
August, 2021
13
June, 2020
10
March, 2020
7
August, 2018
6
May, 2020
6
October, 2019
4
August, 2017
4
January, 2020
4
January, 2022
2
February, 2020
2
November, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
1
October, 2022
Available data
305
bed bed3+
86
tsv
57
bigWig
31
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
451
Homo sapiens
Biosample type
161
cell line
133
tissue
128
primary cell
28
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
411
AMP
20
T1D
18
ENCODE
2
community
Genome assembly (visualization)
350
hg19
130
GRCh38
organ_slims!
extraembryonic component
BIOSAMPLE
TYPE
451 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
accessible chromatin
candidate regulatory elements
gene expression
chromatin state
differential activity
binding sites
histone modifications
eQTL
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
cell line
H1-hESC
39
1
1
8
1
2
1
EndoC_BH1
1
8
8
3
1
H9
8
7
1
H7-hESC
2
1
1
1
1
HUES6
1
1
2
1
1
+ See 20 more…
tissue
islet of Langerhans
1
6
11
3
2
1
13
1
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
endocrine pancreas
4
7
4
trophoblast
3
1
4
2
1
+ See 11 more…
primary cell
pancreatic ductal cell
3
6
3
3
1
2
1
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 13 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
ectodermal cell
1
2
1
cardiac mesoderm primordium
1
1
1
pancreatic ductal cell
3
+ See 3 more…
stem cell
H1-hESC
1
See all biosamples
Download