Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
149
target gene predictions
104
candidate regulatory elements
101
accessible chromatin
82
gene expression
62
chromatin state
37
differential activity
31
binding sites
31
histone modifications
23
eQTL
15
variant allelic effects
8
Fine-mapped variants
2
sQTL
2
variant to gene
1
caQTL
Date released
171
September, 2022
110
February, 2021
105
February, 2024
51
March, 2023
43
May, 2021
26
August, 2021
25
November, 2021
20
January, 2021
20
March, 2020
19
June, 2020
9
May, 2020
7
August, 2017
7
August, 2018
7
January, 2020
6
October, 2019
5
January, 2022
4
February, 2020
3
November, 2019
2
May, 2022
2
October, 2022
1
April, 2019
1
February, 2023
1
January, 2018
1
July, 2020
1
June, 2021
1
September, 2018
Available data
438
bed bed3+
114
tsv
82
bigWig
54
bed bed9
14
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
648
Homo sapiens
Biosample type
211
primary cell
207
tissue
189
cell line
40
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
601
AMP
25
ENCODE
20
T1D
2
community
Genome assembly (visualization)
515
hg19
201
GRCh38
2
hg18
organ_slims!
testis
BIOSAMPLE
TYPE
648 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
accessible chromatin
gene expression
chromatin state
differential activity
binding sites
histone modifications
eQTL
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
caQTL
primary cell
hepatocyte
3
1
8
13
1
1
4
2
pancreatic ductal cell
3
6
3
3
1
2
1
pancreatic beta cell
3
8
3
3
1
trophoblast cell
5
7
1
4
1
pancreatic alpha cell
3
7
3
3
1
+ See 21 more…
tissue
liver
10
13
4
1
9
1
1
2
7
1
islet of Langerhans
1
6
11
3
2
1
13
1
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
chorionic villus
4
8
4
+ See 14 more…
cell line
H1-hESC
39
1
1
8
1
2
1
EndoC_BH1
1
8
8
3
1
HepG2
3
2
2
2
3
5
H9
8
7
1
H7-hESC
2
1
1
1
1
+ See 24 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
hepatocyte
1
2
1
+ See 6 more…
stem cell
H1-hESC
1
See all biosamples
Download