Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
87
accessible chromatin
79
target gene predictions
77
candidate regulatory elements
52
gene expression
47
chromatin state
33
differential activity
25
binding sites
17
histone modifications
15
eQTL
12
variant allelic effects
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
128
September, 2022
95
February, 2021
47
March, 2023
35
May, 2021
26
February, 2024
25
November, 2021
22
January, 2021
13
June, 2020
9
March, 2020
8
August, 2021
7
August, 2018
7
May, 2020
6
October, 2019
4
August, 2017
4
January, 2020
4
January, 2022
4
October, 2022
2
February, 2020
2
November, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
1
May, 2022
Available data
302
bed bed3+
80
tsv
70
bigWig
41
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
1
bed bed9+
Organism
453
Homo sapiens
Biosample type
186
primary cell
138
tissue
123
cell line
6
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
404
AMP
25
ENCODE
22
T1D
2
community
Genome assembly (visualization)
358
hg19
104
GRCh38
BIOSAMPLE
TYPE
453 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
differential activity
binding sites
histone modifications
eQTL
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
6
3
3
3
1
2
1
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
+ See 23 more…
tissue
islet of Langerhans
6
1
11
3
2
1
13
1
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
endocrine pancreas
4
7
4
bone tissue
4
+ See 19 more…
cell line
MCF-7
1
6
9
5
3
2
EndoC_BH1
8
1
8
3
1
MG63
1
1
2
1
1
1
T47D
2
3
2
OCI-LY1
1
2
1
1
1
+ See 15 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
See all biosamples
Download