Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
135
candidate regulatory elements
115
target gene predictions
107
accessible chromatin
89
chromatin state
65
gene expression
54
histone modifications
44
eQTL
33
differential activity
28
variant allelic effects
20
binding sites
2
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
224
September, 2022
141
February, 2021
March, 2020
47
March, 2023
44
May, 2021
33
January, 2020
26
February, 2024
25
June, 2020
25
May, 2020
22
January, 2022
20
February, 2020
20
January, 2021
18
November, 2021
9
August, 2017
8
August, 2021
7
August, 2018
6
October, 2019
6
October, 2022
4
May, 2019
3
November, 2019
3
September, 2023
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
1
March, 2024
Available data
462
bed bed3+
102
tsv
79
bed bed9
78
bigWig
14
bigBed narrowPeak
8
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
695
Homo sapiens
Biosample type
417
tissue
161
primary cell
110
cell line
7
in vitro differentiated cells
1
stem cell
Organ
943
epithelium
649
kidney
449
connective tissue
428
brain
366
musculature of body
310
lung
287
intestine
268
pancreas
254
vasculature
240
heart
235
limb
218
bodily fluid
214
embryo
207
blood
204
skin of body
192
blood vessel
173
large intestine
146
extraembryonic component
146
liver
118
stomach
109
eye
89
bone element
87
mammary gland
83
small intestine
83
uterus
81
adipose tissue
78
prostate gland
73
placenta
72
adrenal gland
69
artery
64
penis
64
ureter
62
lymph node
49
gonad
48
thymus
44
esophagus
40
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
thyroid gland
22
nerve
22
ovary
22
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
vagina
9
urinary bladder
5
trachea
4
nose
1
pericardium
Project
656
AMP
20
T1D
18
ENCODE
2
community
Genome assembly (visualization)
564
hg19
174
GRCh38
month_released!
March, 2020
BIOSAMPLE
TYPE
696 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
gene expression
histone modifications
eQTL
differential activity
variant allelic effects
binding sites
Fine-mapped variants
sQTL
variant to gene
tissue
brain
29
16
2
18
1
3
2
1
1
islet of Langerhans
1
6
3
9
1
13
1
1
2
2
2
body of pancreas
8
5
4
2
1
1
pancreas
5
3
5
3
1
1
1
1
caudate nucleus
5
3
2
4
1
1
2
1
+ See 67 more…
primary cell
pancreatic ductal cell
3
6
3
2
3
1
1
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 21 more…
cell line
EndoC_BH1
8
8
3
1
SK-N-DZ
4
2
1
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 15 more…
in vitro differentiated cells
pancreatic ductal cell
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download