Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
260
gene expression
240
candidate regulatory elements
203
target gene predictions
127
accessible chromatin
122
chromatin state
89
differential activity
27
variant allelic effects
25
binding sites
23
histone modifications
19
eQTL
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
350
September, 2022
272
February, 2021
140
September, 2023
77
February, 2024
47
March, 2023
44
August, 2021
40
May, 2021
29
June, 2020
25
May, 2020
23
November, 2021
20
January, 2021
18
January, 2020
13
March, 2020
11
February, 2020
7
August, 2018
6
October, 2019
5
January, 2022
4
August, 2017
3
October, 2022
2
April, 2019
2
March, 2024
2
November, 2019
1
February, 2023
1
January, 2018
1
June, 2021
1
May, 2019
Available data
646
bed bed3+
337
tsv
117
bed bed9
95
bigWig
87
txt
14
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
1144
Homo sapiens
Biosample type
457
primary cell
450
tissue
202
cell line
34
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
959
AMP
140
KPMP
23
ENCODE
20
T1D
2
community
Genome assembly (visualization)
778
hg19
246
GRCh38
BIOSAMPLE
TYPE
1144 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
differential activity
variant allelic effects
binding sites
histone modifications
eQTL
Fine-mapped variants
sQTL
variant to gene
primary cell
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
pancreatic ductal cell
3
3
6
3
1
1
2
pancreatic beta cell
3
3
8
3
1
trophoblast cell
7
5
1
4
1
+ See 84 more…
tissue
kidney
7
29
14
10
16
1
1
2
1
islet of Langerhans
11
1
6
3
1
2
1
13
2
2
2
right kidney
20
10
1
10
1
renal cortex interstitium
20
9
1
9
1
renal pelvis
19
9
2
9
1
+ See 32 more…
cell line
H1-hESC
8
1
39
1
1
2
1
EndoC_BH1
8
1
8
3
1
H9
7
8
1
HEK293
3
1
1
1
2
1
H7-hESC
1
2
1
1
1
+ See 32 more…
in vitro differentiated cells
endodermal cell
4
2
2
mesodermal cell
4
1
1
1
trophoblast cell
2
2
1
ectodermal cell
2
1
1
cardiac mesoderm primordium
1
1
1
+ See 5 more…
stem cell
H1-hESC
1
See all biosamples
Download