Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
91
accessible chromatin
73
gene expression
71
target gene predictions
55
candidate regulatory elements
38
chromatin state
37
differential activity
24
eQTL
20
histone modifications
18
binding sites
16
variant allelic effects
8
Fine-mapped variants
2
sQTL
2
variant to gene
1
caQTL
Date released
102
September, 2022
61
February, 2021
55
February, 2024
51
March, 2023
37
May, 2021
25
November, 2021
20
January, 2021
19
March, 2020
18
August, 2021
10
June, 2020
9
May, 2020
7
August, 2018
7
January, 2020
6
August, 2017
6
January, 2022
6
October, 2019
4
February, 2020
3
November, 2019
2
May, 2022
1
April, 2019
1
February, 2023
1
January, 2018
1
July, 2020
1
June, 2021
1
March, 2024
1
October, 2022
1
September, 2018
Available data
277
bed bed3+
105
tsv
81
bigWig
31
bed bed9
14
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
456
Homo sapiens
Biosample type
192
primary cell
192
tissue
62
cell line
10
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
409
AMP
25
ENCODE
20
T1D
2
community
Genome assembly (visualization)
331
hg19
128
GRCh38
2
hg18
BIOSAMPLE
TYPE
456 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
chromatin state
differential activity
eQTL
histone modifications
binding sites
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
caQTL
primary cell
hepatocyte
8
13
3
1
1
4
1
2
pancreatic ductal cell
6
3
3
3
2
1
1
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
+ See 18 more…
tissue
liver
4
1
10
13
9
1
7
2
1
1
islet of Langerhans
6
11
1
3
13
1
2
1
2
2
2
body of pancreas
2
5
8
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
thyroid gland
1
5
8
4
1
+ See 10 more…
cell line
EndoC_BH1
8
8
1
3
1
HepG2
2
3
2
2
5
3
HuH-7
1
1
1
1
1
1
Panc1
2
2
1
8988T
1
1
1
+ See 5 more…
in vitro differentiated cells
hepatocyte
1
2
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
See all biosamples
Download