Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
69
accessible chromatin
51
gene expression
47
target gene predictions
35
differential activity
28
candidate regulatory elements
19
chromatin state
eQTL
11
variant allelic effects
7
binding sites
7
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
50
September, 2022
46
March, 2023
35
February, 2021
33
May, 2021
24
February, 2024
21
November, 2021
20
January, 2021
9
March, 2020
7
August, 2018
6
May, 2020
6
October, 2019
5
June, 2020
5
September, 2023
4
January, 2020
3
August, 2017
2
November, 2019
1
April, 2019
1
April, 2020
1
August, 2021
1
February, 2020
1
February, 2023
1
January, 2018
1
June, 2021
Available data
172
bed bed3+
80
tsv
60
bigWig
15
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
283
Homo sapiens
Biosample type
143
primary cell
99
tissue
36
cell line
5
in vitro differentiated cells
Organ
946
epithelium
648
kidney
439
connective tissue
437
brain
368
musculature of body
310
lung
286
intestine
262
pancreas
260
vasculature
249
heart
239
limb
216
bodily fluid
215
embryo
205
blood
201
skin of body
198
blood vessel
172
large intestine
148
liver
145
extraembryonic component
118
stomach
108
eye
89
bone element
87
mammary gland
83
small intestine
82
uterus
77
prostate gland
76
adipose tissue
72
adrenal gland
72
placenta
70
artery
64
penis
64
ureter
62
lymph node
49
thymus
47
gonad
42
esophagus
41
spinal cord
33
spleen
24
lymphoid tissue
24
testis
23
nerve
23
vein
22
ovary
22
thyroid gland
21
lymphatic vessel
18
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
12
pituitary gland
10
tongue
10
urinary bladder
9
vagina
5
trachea
4
nose
1
pericardium
Project
234
AMP
21
ENCODE
20
T1D
5
KPMP
2
community
1
LungMap
Genome assembly (visualization)
192
hg19
61
GRCh38
annotation_type!
eQTL
BIOSAMPLE
TYPE
283 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
6
3
3
3
1
1
2
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
4
3
1
+ See 16 more…
tissue
islet of Langerhans
6
11
1
3
1
2
1
2
2
2
body of pancreas
2
5
8
4
1
3
pancreas
5
5
5
3
1
1
1
endocrine pancreas
4
7
4
pancreatic ductal cell
2
+ See 6 more…
cell line
EndoC_BH1
8
8
1
3
1
Panc1
2
2
1
8988T
1
1
1
HPDE6-E6E7
1
1
1
dermis lymphatic vessel endothelial cell
1
1
+ See 2 more…
in vitro differentiated cells
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download