Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
accessible chromatin
63
target gene predictions
52
candidate regulatory elements
48
gene expression
33
differential activity
32
chromatin state
17
binding sites
15
eQTL
12
variant allelic effects
11
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
82
September, 2022
59
February, 2021
47
March, 2023
27
May, 2021
11
February, 2024
10
January, 2021
10
November, 2021
9
March, 2020
8
August, 2021
7
August, 2018
4
August, 2017
4
January, 2022
4
May, 2020
3
October, 2022
2
February, 2020
2
January, 2020
1
April, 2019
1
February, 2023
1
January, 2018
Available data
162
bed bed3+
76
tsv
27
bed bed9
7
bigBed narrowPeak
7
bigWig
3
csv
2
bigBed bed9
Organism
292
Homo sapiens
Biosample type
130
primary cell
96
tissue
61
cell line
5
in vitro differentiated cells
Organ
737
epithelium
602
kidney
424
brain
370
connective tissue
348
musculature of body
296
lung
268
intestine
230
vasculature
229
heart
224
limb
212
pancreas
206
bodily fluid
203
embryo
195
blood
191
skin of body
178
blood vessel
164
large intestine
137
extraembryonic component
132
liver
111
stomach
82
adipose tissue
81
small intestine
80
mammary gland
80
uterus
74
bone element
73
prostate gland
69
placenta
66
adrenal gland
64
artery
61
penis
60
ureter
54
lymph node
50
eye
47
thymus
45
gonad
41
esophagus
41
spinal cord
32
spleen
24
testis
22
lymphoid tissue
22
nerve
21
ovary
21
thyroid gland
21
vein
18
mouth
17
lymphatic vessel
13
bronchus
13
pituitary gland
12
breast
11
bone marrow
10
skeleton
10
vagina
9
tongue
9
urinary bladder
4
trachea
3
nose
1
pericardium
Project
270
AMP
10
ENCODE
10
T1D
2
community
Genome assembly (visualization)
201
hg19
45
GRCh38
annotation_type!
accessible chromatin
BIOSAMPLE
TYPE
292 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
gene expression
differential activity
chromatin state
binding sites
eQTL
variant allelic effects
histone modifications
Fine-mapped variants
sQTL
variant to gene
primary cell
pancreatic ductal cell
3
3
3
1
1
2
mammary gland epithelial cell
4
3
3
1
1
pancreatic delta cell
4
3
3
1
pancreatic acinar cell
3
3
3
1
pancreatic alpha cell
3
3
3
1
+ See 16 more…
tissue
islet of Langerhans
1
11
3
2
13
1
1
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
3
1
1
1
1
endocrine pancreas
4
7
4
mammary gland
1
1
cell line
MCF-7
6
9
5
3
2
EndoC_BH1
1
8
3
1
T47D
2
3
2
Panc1
2
2
1
8988T
1
1
1
+ See 4 more…
in vitro differentiated cells
pancreatic ductal cell
3
mammary gland epithelial cell
1
1
See all biosamples
Download